EBI Biostudies Scraper

EBI Proteins Scraper

benthepythondev/ebi-proteins-scraper

Collect EMBL-EBI Proteins API records and export id, dbreferences id, description, type, comments type, features type as structured JSON, CSV or Excel data.

EBI Proteins API Scraper

parseforge/ebi-proteins-api-scraper

Tap the EMBL EBI Proteins API for curated protein entries filtered by protein name and organism. Returns accession identifiers, gene names, taxonomy, feature annotations, and sequence metadata. Useful for comparative genomics, interaction analysis, and protein function enrichment studies.

EBI Ontology Lookup (OLS) Scraper

crawlerbros/ebi-ontology-scraper

Scrape the EMBL-EBI Ontology Lookup Service (OLS4) - 280+ biomedical and scientific ontologies. List ontologies, browse terms, or search across concepts by keyword. Returns labels, definitions, IRIs, synonyms and identifiers as clean JSON.

EBI OLS Ontologies Scraper

parseforge/ebi-ols-ontologies-scraper

Discover structured records from Ebi Ols Ontologies with names, identifiers, dates, descriptions, status flags and source links. Ideal for research, intelligence and operational dashboards. Run on demand or on a recurring schedule and feed every row into your favourite analytics or workflow stack.

EBI OLS Ontologies List Scraper

parseforge/ebi-ols-ontologies-list-scraper

Browse every ontology indexed by the EMBL EBI Ontology Lookup Service. Returns ontology identifiers, titles, descriptions, term counts, version, and source URLs. Useful for picking the right vocabulary for biomedical annotation, FAIR data harmonization, and semantic search index building.

EBI Ontology Lookup Service Scraper

parseforge/ebi-ols-ontology-scraper

Browse the EBI Ontology Lookup Service catalogue of biomedical ontologies. Returns ontology id, title, description, term count, property count, version, homepage, and namespace. Useful for bioinformatics tooling, ontology alignment, and semantic research across life science domains.

Interpro Protein Families Scraper

benthepythondev/interpro-protein-families-scraper

Collect InterPro records and export name, type, accession, source database, source, scraped at as structured JSON, CSV or Excel data.

InterPro Protein Families Scraper

parseforge/interpro-protein-families-scraper

Pull protein family and domain entries from the EBI InterPro database by accession or by browsing every entry. Each record carries the accession, type, name, member database signatures from Pfam, SMART and CDD, GO terms, and protein counts. Built for bioinformatics annotation work.

IntAct Molecular Interactions Scraper

parseforge/intact-interactions-scraper

Search the EMBL EBI IntAct database for curated molecular interaction evidence. Query by gene or protein name and retrieve interactor pairs, interaction types, detection methods, source publication IDs, and confidence scores. Useful for systems biology and interactome research.

BioModels Models Scraper

parseforge/biomodels-models-scraper

Search the EMBL EBI BioModels repository with any free text query for published systems biology models. Returns model identifier, name, publication, authors, format, and submission date. Useful for computational biology research, model reuse, and SBML simulation pipeline bootstrapping.