You can access the NCBI Clinvar Variants Scraper programmatically from your own applications by using the Apify API. You can also choose the language preference from below. To use the Apify API, you’ll need an Apify account and your API token, found in Integrations settings in Apify Console.

Python

JavaScript

CLI

OpenAPI

HTTP

MCP

1from apify_client import ApifyClient
2
3# Initialize the ApifyClient with your Apify API token
4# Replace '<YOUR_API_TOKEN>' with your token.
5client = ApifyClient("<YOUR_API_TOKEN>")
6
7# Prepare the Actor input
8run_input = {
9    "query": "BRCA1[gene]",
10    "maxResults": 3,
11}
12
13# Run the Actor and wait for it to finish
14run = client.actor("benthepythondev/ncbi-clinvar-variants-scraper").call(run_input=run_input)
15
16# Fetch and print Actor results from the run's dataset (if there are any)
17print("💾 Check your data here: https://console.apify.com/storage/datasets/" + run["defaultDatasetId"])
18for item in client.dataset(run["defaultDatasetId"]).iterate_items():
19    print(item)
20
21# 📚 Want to learn more 📖? Go to → https://docs.apify.com/api/client/python/docs/quick-start

NCBI Clinvar Variants Scraper API in Python

The Apify API client for Python is the official library that allows you to use NCBI Clinvar Variants Scraper API in Python, providing convenience functions and automatic retries on errors.

Install the apify-client

$pip install apify-client

Other API clients include:

NCBI Clinvar Variants Scraper API in JavaScript

NCBI Clinvar Variants Scraper API through CLI

NCBI Clinvar Variants Scraper OpenAPI definition

NCBI Clinvar Variants Scraper API

NCBI ClinVar Variants Scraper - Genetic Variation Data

parseforge/ncbi-clinvar-variants-scraper

Sweep medical and biomedical records from Ncbi Clinvar Variants with names, identifiers, classifications, descriptions, status and source links. Ideal for healthcare research, pharma teams and clinical analytics. Run on demand or on a recurring schedule and feed every row into your favourite anal.

ParseForge

NCBI ClinVar Variant Scraper

parseforge/clinvar-esummary-scraper

Query NCBI ClinVar for human genetic variants tied to disease. Search by gene symbol, variant ID, or clinical significance and pull variation IDs, gene info, molecular consequence, clinical assertions, and review status. Useful for clinical genomics, variant curation, and research.

ParseForge

NCBI Gene Records Scraper

benthepythondev/ncbi-gene-records-scraper

Collect NCBI Gene records and export gene id, query, source, scraped at as structured JSON, CSV or Excel data.

Ben

Clinical Trial Multi-Source Aggregator

parseforge/clinical-trial-multi-source-scraper

Search active and historical clinical trials across the EU CTIS, WHO, openFDA and ClinVar variants in one query. Pull trial IDs, sponsors, phases, conditions, locations, status and outcome data. Built for pharma research, patient navigators and biotech analysts.

ParseForge

NCBI dbSNP Variants Scraper

parseforge/ncbi-dbsnp-variants-scraper

Discover medical and biomedical records from Ncbi Dbsnp Variants with names, identifiers, classifications, descriptions, status and source links. Ideal for healthcare research, pharma teams and clinical analytics. Run on demand or on a recurring schedule and feed every row into your favourite ana.

ParseForge

Open Targets Disease Scraper

benthepythondev/open-targets-disease-scraper

Collect Open Targets Platform records and export id, name, description, entity, source, scraped at as structured JSON, CSV or Excel data.

Ben

Statistics Canada Tables Scraper

benthepythondev/statistics-canada-tables-scraper

Collect Statistics Canada Web Data Service records and export status, download url, table id, language, source, scraped at as structured JSON, CSV or Excel data.

Ben

NCBI Bio Datasets

flamelit_arowana/ncbi-bio-datasets

Query NCBI databases (PubMed, Gene, Protein, SNPs) via the E-utilities API. Search biomedical literature, gene sequences, protein data, and genetic variants — no API key required.

Kevin Grossi

Pubmed Research Scraper

fortuitous_pirate/pubmed-research-scraper

Search and extract biomedical research papers from PubMed (NCBI). Filter by keyword, journal, author, or date range. Returns paper title, authors, journal, publication date, DOI, and citation count. Free NCBI API — no authentication required.

Fortuitous Pirate

PubMed & NCBI Databases API

alizarin_refrigerator-owner/pubmed-ncbi-databases-api

Access PubMed and NCBI databases for biomedical literature. Search 36+ million citations, get article abstracts, citation metrics, author profiles, and journal data. Essential for scientific research and pharma market intelligence.