NCBI Gene Records Scraper

NCBI Gene Database Scraper

parseforge/ncbi-eutils-gene-scraper

Query NCBI Gene through Entrez syntax such as BRCA1[gene] AND human[orgn]. Returns gene symbol, description, organism, chromosome, map location, summary, aliases, and designations. Useful for genomics pipelines, target discovery, and clinical research across model organisms.

NCBI EUtils Gene Summary Scraper

parseforge/ncbi-eutils-gene-summary-scraper

Pull gene summaries from NCBI EUtils by Gene UID, returning official symbol, full name, aliases, organism, chromosome, map location, and description. Useful for annotating variant lists, building gene knowledge panels, and enriching bioinformatics dashboards with canonical NCBI metadata.

NCBI Gene Lookup — Genomics API for Pharma R&D

azureblue/ncbi-gene-scraper

Search NCBI Gene via E-utilities. Returns gene symbol, full name, chromosome location, map locus, aliases, OMIM ID, organism and functional summary.

Query NCBI databases (PubMed, Gene, Protein, SNPs) via the E-utilities API. Search biomedical literature, gene sequences, protein data, and genetic variants — no API key required.

HGNC Gene Symbols Scraper

parseforge/hgnc-gene-symbols-scraper

Query the HUGO Gene Nomenclature Committee database for approved human gene symbols, names, aliases, chromosomal location, gene family, RefSeq, Ensembl, OMIM, UniProt, and external links. Export to JSON, CSV, or Excel for bioinformatics, genomics research, and pharmaceutical pipelines.

Ensembl Gene Lookup Scraper

parseforge/ensembl-gene-lookup-scraper

Resolve human gene symbols against the Ensembl REST API to fetch stable gene identifiers, chromosome location, strand, biotype, and description. Useful for variant annotation, RNA seq pipelines, and gene set enrichment workflows that need clean Ensembl mappings from a list of HGNC symbols.

NCBI Clinvar Variants Scraper

benthepythondev/ncbi-clinvar-variants-scraper

Collect NCBI ClinVar records and export clinvar id, query, source, scraped at as structured JSON, CSV or Excel data.

NCBI ClinVar Variant Scraper

parseforge/clinvar-esummary-scraper

Query NCBI ClinVar for human genetic variants tied to disease. Search by gene symbol, variant ID, or clinical significance and pull variation IDs, gene info, molecular consequence, clinical assertions, and review status. Useful for clinical genomics, variant curation, and research.

NCBI dbSNP Variant Scraper

parseforge/dbsnp-esummary-scraper

Search NCBI dbSNP for short genetic variants by gene symbol or rs ID. Returns rs accession, chromosome position, allele info, gene context, and global minor allele frequencies. Useful for GWAS pipelines, variant annotation, population genetics, and pharmacogenomics work.

Open Targets Disease Scraper

benthepythondev/open-targets-disease-scraper

Collect Open Targets Platform records and export id, name, description, entity, source, scraped at as structured JSON, CSV or Excel data.