Pricing

from $1.00 / 1,000 article scrapeds

PubMed Scraper

Scrape biomedical literature from PubMed — title, abstract, authors, journal, publication date, DOI, PMC ID, MeSH terms, keywords and publication types — by search query or PMID. Official NCBI E-utilities API, no key, no proxy.

Pricing

from $1.00 / 1,000 article scrapeds

Rating

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(0)

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Bruno

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Monthly active users

2 days ago

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PubMed Scraper 🩺

Scrape biomedical literature from PubMed (the NCBI/NIH database of 37M+ citations). Search by keyword or fetch exact papers by PMID, and get clean structured records — including full abstracts.

Perfect for systematic / literature reviews, pharma & biotech intelligence, RAG / AI training datasets, meta-analyses, and researcher / KOL mapping.

What it extracts (one row per article)

pmid, title, abstract (with section labels)
authors, journal, published
doi, doi_url, pmc_id
mesh_terms, keywords, publication_types, language
url

Input

{
  "queries": ["CRISPR cancer therapy", "semaglutide[Title] AND 2024[PDAT]"],
  "pmids": ["38000000"],
  "maxItemsPerQuery": 300,
  "apiKey": ""
}

queries — full PubMed query syntax supported ([Title], [Author], [MeSH], [PDAT], boolean AND/OR/NOT).
pmids — fetch exact records by PubMed ID.
apiKey — optional NCBI key to raise the rate limit (3 → 10 req/s). Works fine without one.

Output example

{
  "type": "article",
  "pmid": "38010000",
  "title": "CRISPR-based approaches in solid tumors",
  "abstract": "BACKGROUND: ...\nMETHODS: ...\nRESULTS: ...",
  "authors": ["Jane A Smith", "Wei Chen"],
  "journal": "Nature Reviews Cancer",
  "published": "2024-Jan-15",
  "doi": "10.1038/s41568-024-00000-0",
  "doi_url": "https://doi.org/10.1038/s41568-024-00000-0",
  "pmc_id": "PMC10800000",
  "mesh_terms": ["CRISPR-Cas Systems", "Neoplasms"],
  "publication_types": ["Journal Article", "Review"],
  "url": "https://pubmed.ncbi.nlm.nih.gov/38010000/"
}

Notes

Uses the official NCBI E-utilities API (esearch + efetch) — free, stable.
Respects NCBI rate limits automatically; add your API key for higher throughput.
No proxy required.

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