EBI Ontology Lookup (OLS) Scraper

EBI OLS Ontologies List Scraper

parseforge/ebi-ols-ontologies-list-scraper

Browse every ontology indexed by the EMBL EBI Ontology Lookup Service. Returns ontology identifiers, titles, descriptions, term counts, version, and source URLs. Useful for picking the right vocabulary for biomedical annotation, FAIR data harmonization, and semantic search index building.

EBI Ontology Lookup Service Scraper

parseforge/ebi-ols-ontology-scraper

Browse the EBI Ontology Lookup Service catalogue of biomedical ontologies. Returns ontology id, title, description, term count, property count, version, homepage, and namespace. Useful for bioinformatics tooling, ontology alignment, and semantic research across life science domains.

EBI OLS Ontologies Scraper

parseforge/ebi-ols-ontologies-scraper

Discover structured records from Ebi Ols Ontologies with names, identifiers, dates, descriptions, status flags and source links. Ideal for research, intelligence and operational dashboards. Run on demand or on a recurring schedule and feed every row into your favourite analytics or workflow stack.

Mondo Disease Ontology Scraper

parseforge/mondo-disease-scraper

Pull harmonized disease terms from the Mondo Disease Ontology. Query a keyword or stream the full hierarchy and collect Mondo IDs, labels, definitions, synonyms, and cross references to OMIM, Orphanet, DOID, and MeSH. Useful for rare disease research, ontology mapping, and EHR coding.

EBI Proteins API Scraper

parseforge/ebi-proteins-api-scraper

Tap the EMBL EBI Proteins API for curated protein entries filtered by protein name and organism. Returns accession identifiers, gene names, taxonomy, feature annotations, and sequence metadata. Useful for comparative genomics, interaction analysis, and protein function enrichment studies.

HPO Human Phenotype Ontology Scraper

parseforge/hpo-phenotypes-scraper

Search the Human Phenotype Ontology by keyword or HP ID and pull back terms with hpoId, name, definition, synonyms, parents, children, plus optional associated diseases and genes. Useful for rare disease research, clinical curation, and genomic variant annotation pipelines.

NCI Thesaurus Concept Scraper

parseforge/nci-thesaurus-concept-scraper

Pull biomedical and cancer concepts from the NCI Thesaurus via the NCI EVS REST API. Search by keyword or list NCIt codes to return preferred name, synonyms, definition, semantic type, status, and parent and child concepts. Great for ontology mapping and clinical research.

HPO Human Phenotype Ontology Scraper

parseforge/hpo-phenotype-jax-scraper

Search the Human Phenotype Ontology from Jackson Laboratory for clinical phenotype terms. Returns HPO IDs, term names, definitions, synonyms, and parent classes. Useful for rare disease diagnostics, phenotype to gene mapping, and building structured clinical descriptors.

NLM MeSH SPARQL Scraper

parseforge/mesh-sparql-scraper

Pull terms from the NLM Medical Subject Headings SPARQL endpoint by release year and optional label substring. Returns descriptor URIs, preferred labels, tree numbers, scope notes, and concept relationships. Useful for biomedical indexing, literature search tooling, and ontology alignment.