Pricing

from $0.35 / 1,000 genomics records

cBioPortal Cancer Genomics Extractor

Point at ANY cBioPortal instance (the MSKCC flagship, BCGSC, GENIE, institutional mirrors) and pull cancer-genomics metadata: studies, the OncoTree cancer-type taxonomy, molecular profiles, and genes. One actor, the whole cBioPortal REST API, every row lossless.

Pricing

from $0.35 / 1,000 genomics records

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Datamule

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6 days ago

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You can access the cBioPortal Cancer Genomics Extractor programmatically from your own applications by using the Apify API. You can also choose the language preference from below. To use the Apify API, you’ll need an Apify account and your API token, found in Integrations settings in Apify Console.

Python

JavaScript

CLI

OpenAPI

HTTP

MCP

1import { ApifyClient } from 'apify-client';
2
3// Initialize the ApifyClient with your Apify API token
4// Replace the '<YOUR_API_TOKEN>' with your token
5const client = new ApifyClient({
6    token: '<YOUR_API_TOKEN>',
7});
8
9// Prepare Actor input
10const input = {
11    "server": "https://www.cbioportal.org",
12    "servers": [
13        "https://www.cbioportal.org",
14        "https://cbioportal.bcgsc.ca"
15    ],
16    "pageSize": 500,
17    "maxRecords": 1000
18};
19
20// Run the Actor and wait for it to finish
21const run = await client.actor("datamule/cbioportal-cancer-genomics-extractor").call(input);
22
23// Fetch and print Actor results from the run's dataset (if any)
24console.log('Results from dataset');
25console.log(`💾 Check your data here: https://console.apify.com/storage/datasets/${run.defaultDatasetId}`);
26const { items } = await client.dataset(run.defaultDatasetId).listItems();
27items.forEach((item) => {
28    console.dir(item);
29});
30
31// 📚 Want to learn more 📖? Go to → https://docs.apify.com/api/client/js/docs

cBioPortal Cancer Genomics Extractor — Studies & Genes API in JavaScript

The Apify API client for JavaScript is the official library that allows you to use cBioPortal Cancer Genomics Extractor API in JavaScript or TypeScript, providing convenience functions and automatic retries on errors.

Install the apify-client

$npm install apify-client

Other API clients include:

cBioPortal Cancer Genomics Extractor API in Python

cBioPortal Cancer Genomics Extractor API through CLI

cBioPortal Cancer Genomics Extractor OpenAPI definition

cBioPortal Cancer Genomics Extractor API

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