Pricing

Pay per usage

NCBI Bio Datasets

Query NCBI databases (PubMed, Gene, Protein, SNPs) via the E-utilities API. Search biomedical literature, gene sequences, protein data, and genetic variants — no API key required.

Pricing

Pay per usage

Rating

0.0

(0)

Developer

Kevin Grossi

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Bookmarked

Total users

Monthly active users

7 days ago

Last modified

Categories

Search Query

query

Required

Search terms for the NCBI database (e.g., 'BRCA1', 'SARS-CoV-2 spike protein', 'CRISPR Cas9')

Type:string

Default:BRCA1

Database

database

Required

NCBI database to search

Type:string

Default:pubmed

Options:

pubmedgeneproteinnucleotidesnptaxonomy

Organism Filter

organism

Optional

Restrict results to a specific organism (e.g., 'Homo sapiens', 'Mus musculus', 'SARS-CoV-2')

Type:string

Date From

dateFrom

Optional

Earliest publication date (format: YYYY/MM/DD, e.g., '2020/01/01')

Type:string

Date To

dateTo

Optional

Latest publication date (format: YYYY/MM/DD, e.g., '2024/12/31')

Type:string

Max Results

maxResults

Optional

Maximum number of results to return (max 100)

Type:integer

Minimum:1

Maximum:100

Default:20

Contact Email (optional)

Optional

Email sent to NCBI with each request (good API citizenship; defaults to contact@example.com)

Type:string

NCBI Gene Lookup — Genomics API for Pharma R&D

azureblue/ncbi-gene-scraper

Search NCBI Gene via E-utilities. Returns gene symbol, full name, chromosome location, map locus, aliases, OMIM ID, organism and functional summary.

azureblue

NCBI EUtils Gene Summary Scraper

parseforge/ncbi-eutils-gene-summary-scraper

Pull gene summaries from NCBI EUtils by Gene UID, returning official symbol, full name, aliases, organism, chromosome, map location, and description. Useful for annotating variant lists, building gene knowledge panels, and enriching bioinformatics dashboards with canonical NCBI metadata.

ParseForge

NCBI Gene Database Scraper

parseforge/ncbi-eutils-gene-scraper

Query NCBI Gene through Entrez syntax such as BRCA1[gene] AND human[orgn]. Returns gene symbol, description, organism, chromosome, map location, summary, aliases, and designations. Useful for genomics pipelines, target discovery, and clinical research across model organisms.

ParseForge

PubMed & NCBI Databases API

alizarin_refrigerator-owner/pubmed-ncbi-databases-api

Access PubMed and NCBI databases for biomedical literature. Search 36+ million citations, get article abstracts, citation metrics, author profiles, and journal data. Essential for scientific research and pharma market intelligence.

The Howlers

PubMed Search Scraper

crawlerbros/pubmed-search-scraper

Search PubMed (NCBI E-utilities) for biomedical articles by keyword, date range, and article type. Returns title, authors, journal, abstract, DOI, MeSH terms, keywords, and citation. Free public API, no proxy, no cookies. Optional NCBI API key for higher rate limits.

Crawler Bros

PubMed Scraper

lulzasaur/pubmed-scraper

Search and scrape PubMed biomedical literature via NCBI E-utilities. Get titles, authors, abstracts, journals, MeSH terms, DOIs. Search by keyword or fetch by PMID.

lulz bot

PubMed NCBI Scraper - Biomedical Articles & MeSH (No Key)

themineworks/pubmed-ncbi-scraper

Scrape 36M+ PubMed/NCBI biomedical articles: title, abstract, authors, journal, PMID, DOI, MeSH terms. No API key needed. Build literature reviews & AI training corpora. Works in Claude, ChatGPT & any MCP agent.

The Mine Works

Pubmed Research Scraper

fortuitous_pirate/pubmed-research-scraper

Search and extract biomedical research papers from PubMed (NCBI). Filter by keyword, journal, author, or date range. Returns paper title, authors, journal, publication date, DOI, and citation count. Free NCBI API — no authentication required.

Fortuitous Pirate

PubMed Research Article Scraper

taroyamada/pubmed-research-intelligence

Search PubMed with official NCBI E-utilities and export article, author, journal, PMID, DOI, publication type, and biomedical topic rows.

naoki anzai

PubMed Biomedical Article Search

fit_melon/pubmed-biomedical-article-search

Search PubMed's 35M+ biomedical citations by keyword: title, authors, journal, year, DOI, PMID and abstract for each match. Official NCBI E-utilities API. Free — you only pay Apify usage.