Resolve protein structure evidence across RCSB PDB, PDBe, AlphaFold DB, and UniProt with source provenance, conflicts, and downloadable artifacts.

RCSB PDB Protein Structure Scraper

parseforge/rcsb-pdb-scraper

Scrape protein structure entries from the RCSB Protein Data Bank including title, authors, citation, experimental method (X-ray, EM, NMR), resolution, cell parameters, symmetry, polymer entities, keywords and entry metadata. No API key required.

RCSB Protein Data Bank Scraper. Structured data export for lead generation, enrichment, and competitive research.

Scrape UniProt protein knowledge base: 250M+ proteins including reviewed Swiss-Prot entries. Search by protein name, gene, organism. Free, no auth required.

STRING Protein Interactions Scraper

parseforge/string-protein-interactions-scraper

Pull protein interaction networks from STRING DB by passing one or more protein identifiers and an NCBI taxon ID. Returns interacting partner names, STRING IDs, combined confidence scores, and evidence channel subscores. Useful for systems biology, target discovery, and pathway analysis.

UniProt Protein Scraper

parseforge/uniprot-protein-scraper

Query the UniProt knowledgebase with any free text search to retrieve protein entries with accession identifiers, names, gene symbols, organism, sequence length, and functional annotations. Useful for proteomics research, bioinformatics pipelines, and structural biology cross referencing.

Track public GitHub software releases and security advisories with canonical evidence, durable baselines, and deterministic change ledgers.

UniProt Protein Sequence & Annotation Scraper

parseforge/uniprot-scraper

Export UniProt Knowledgebase entries — search Swiss-Prot by organism, keyword, gene, or any UniProt query, or fetch a single accession. Returns names, genes, organism, sequence length & molecular weight, keywords, comments, features, and PDB/RefSeq/Ensembl/KEGG cross-refs.

EBI Proteins API Scraper

parseforge/ebi-proteins-api-scraper

Tap the EMBL EBI Proteins API for curated protein entries filtered by protein name and organism. Returns accession identifiers, gene names, taxonomy, feature annotations, and sequence metadata. Useful for comparative genomics, interaction analysis, and protein function enrichment studies.

InterPro Protein Families Scraper

parseforge/interpro-protein-families-scraper

Pull protein family and domain entries from the EBI InterPro database by accession or by browsing every entry. Each record carries the accession, type, name, member database signatures from Pfam, SMART and CDD, GO terms, and protein counts. Built for bioinformatics annotation work.