UniProt Scraper - Proteins, Genes & Sequences
Pricing
from $3.50 / 1,000 results
Scrape the UniProt protein knowledgebase in bulk. Extract accession, protein and gene names, organism, taxonomy, function, PDB cross-references and the full amino-acid sequence to CSV/JSON. No API key, no login.
Accession
accession
Optional
Primary UniProt accession
Entry name
entryName
Optional
UniProtKB entry name
Protein name
proteinName
Optional
Recommended protein name
Alternative names
alternativeNames
Optional
Alternative names, separated by a pipe
Ec numbers
ecNumbers
Optional
EC numbers, separated by a pipe
Gene names
geneNames
Optional
Gene names, separated by a pipe
Gene synonyms
geneSynonyms
Optional
Gene synonyms, separated by a pipe
Organism
organism
Optional
Scientific name of the source organism
Common name
commonName
Optional
Common name of the organism when published
Taxon id
taxonId
Optional
NCBI taxonomy identifier
Lineage
lineage
Optional
Taxonomic lineage, separated by a pipe
Is reviewed
isReviewed
Optional
True for manually reviewed Swiss-Prot entries
Function text
functionText
Optional
Curated function description when published
Sequence length
sequenceLength
Optional
Number of amino acids
Molecular weight
molecularWeight
Optional
Molecular weight in daltons
Sequence
sequence
Optional
Full amino-acid sequence
Pdb ids
pdbIds
Optional
PDB structure IDs, separated by a pipe
Entry url
entryUrl
Optional
UniProt entry page
Fasta url
fastaUrl
Optional
Direct FASTA download URL
Query
query
Optional
Search query this row came from
Page
page
Optional
Result page the entry appeared on
Scraped at
scrapedAt
Optional
ISO timestamp of extraction
