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ENA Sequence Read Archive Metadata Scraper

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$0.5/1K 🔥 ENA Sequence Archive! Query SRA/ENA runs & experiments with rich metadata. No key. JSON, CSV, Excel or API in seconds. Feed sequencing meta-analysis workflows ⚡

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from $0.50 / 1,000 results

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Developer

ninhothedev

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Monthly active users

7 days ago

Last modified

Categories

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Education

Automation

Mode (result type)

mode

Required

Which ENA record type to search: 'runs' = sequencing runs (read_run, includes FASTQ links), 'studies' = studies/projects (study), 'samples' = biological samples (sample).

Type:string

Default:runs

Options:

runsstudiessamples

NCBI Taxon ID

taxonId

Optional

Optional NCBI taxonomy ID to filter by organism. Builds an ENA tax_eq() clause, e.g. '9606' for Homo sapiens, '10090' for mouse. Ignored if 'Free query' is set. Prefilled with 9606 so a default run returns human data immediately; clear it to run a broader query.

Type:string

Example:

9606

Free ENA query expression

freeQuery

Optional

Optional raw ENA Portal query expression. Overrides 'Taxon ID' when set. Examples: 'tax_tree(2)', 'instrument_platform="OXFORD_NANOPORE"', 'first_public>=2024-01-01 AND tax_eq(9606)'.

Type:string

Example:

tax_eq(9606) AND instrument_platform="ILLUMINA"

Library strategy

libraryStrategy

Optional

Optional library strategy filter, AND-ed onto the query. Examples: 'WGS', 'WXS', 'RNA-Seq', 'ChIP-Seq', 'AMPLICON', 'ATAC-seq'. Applies mainly to 'runs' mode.

Type:string

Example:

WGS

Max items

maxItems

Optional

Maximum number of records to fetch and push to the dataset (1-10000).

Type:integer

Minimum:1

Maximum:10000

Default:200

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