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from $0.50 / 1,000 results

NCBI Genome Assemblies Scraper

$0.5/1K 🔥 NCBI Genomes! List genome assemblies by taxon with stats & accessions. No key. JSON, CSV, Excel or API in seconds. Source reference genomes for pipelines ⚡

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from $0.50 / 1,000 results

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NCBI Genome Assemblies Scraper API through CLI

The Apify CLI is the official tool that allows you to use NCBI Genome Assemblies Scraper locally, providing convenience functions and automatic retries on errors.

Install Apify CLI

Using installation script (macOS/Linux):

$curl -fsSL https://apify.com/install-cli.sh | bash

Using installation script (Windows):

$irm https://apify.com/install-cli.ps1 | iex

Using Homebrew:

$brew install apify-cli

Using npm:

$npm install -g apify-cli

Other API clients include:

NCBI Genome Assemblies Scraper API in Python

NCBI Genome Assemblies Scraper API in JavaScript

NCBI Genome Assemblies Scraper OpenAPI definition

NCBI Genome Assemblies Scraper API

UCSC Genome Browser Tracks Scraper

parseforge/ucsc-genome-browser-tracks-scraper

Scrapes UCSC Genome Browser track metadata for a given genome assembly and returns each track as a flat row with its table name, type, group, description, and row count.

ParseForge

NCBI E-utilities Scraper (PubMed, Gene, Protein)

ninhothedev/ncbi-eutils-scraper

$0.5/1K 🔥 NCBI E-utilities! Search PubMed, genes & NCBI databases with full metadata. No key. JSON, CSV, Excel or API in seconds. Automate literature and genomics data mining ⚡

ninhothedev

NCBI Gene Records Scraper

benthepythondev/ncbi-gene-records-scraper

Collect NCBI Gene records and export gene id, query, source, scraped at as structured JSON, CSV or Excel data.

Ben

NCBI Clinvar Variants Scraper

benthepythondev/ncbi-clinvar-variants-scraper

Collect NCBI ClinVar records and export clinvar id, query, source, scraped at as structured JSON, CSV or Excel data.

Ben

PubMed Search Scraper

crawlerbros/pubmed-search-scraper

Search PubMed (NCBI E-utilities) for biomedical articles by keyword, date range, and article type. Returns title, authors, journal, abstract, DOI, MeSH terms, keywords, and citation. Free public API, no proxy, no cookies. Optional NCBI API key for higher rate limits.

Crawler Bros

Pubmed Research Scraper

fortuitous_pirate/pubmed-research-scraper

Search and extract biomedical research papers from PubMed (NCBI). Filter by keyword, journal, author, or date range. Returns paper title, authors, journal, publication date, DOI, and citation count. Free NCBI API — no authentication required.

Fortuitous Pirate

YouTube Search Scraper

ninhothedev/youtube-search-scraper

$0.5/1K 🔥 Fast YouTube search scraper! Videos by keyword — title, channel, views, duration & link. No API key, no quota. JSON, CSV, Excel or API in seconds. Pull thousands for discovery, monitoring & research ⚡

ninhothedev

NCBI Bio Datasets

flamelit_arowana/ncbi-bio-datasets

Query NCBI databases (PubMed, Gene, Protein, SNPs) via the E-utilities API. Search biomedical literature, gene sequences, protein data, and genetic variants — no API key required.

Kevin Grossi

PubMed & NCBI Databases API

alizarin_refrigerator-owner/pubmed-ncbi-databases-api

Access PubMed and NCBI databases for biomedical literature. Search 36+ million citations, get article abstracts, citation metrics, author profiles, and journal data. Essential for scientific research and pharma market intelligence.

The Howlers

NCBI dbSNP Variants Scraper

parseforge/ncbi-dbsnp-variants-scraper

Scrapes NCBI dbSNP variant records by free-text query and returns each one as a flat row with rsID, alleles, clinical significance, and genomic location.

ParseForge