UniProt Protein Scraper - Sequences, Genes & Function

UniProt Proteins Scraper

parseforge/uniprot-proteins-scraper

Query UniProt with its native syntax such as reviewed=true or organism_id 9606. Returns accession, protein name, organism, gene names, sequence, length, function, keywords, EC numbers, and reference count. Restrict to Swiss-Prot reviewed entries. Useful for proteomics and drug discovery.

UniProt Protein Sequence & Annotation Scraper

parseforge/uniprot-scraper

Export UniProt Knowledgebase entries — search Swiss-Prot by organism, keyword, gene, or any UniProt query, or fetch a single accession. Returns names, genes, organism, sequence length & molecular weight, keywords, comments, features, and PDB/RefSeq/Ensembl/KEGG cross-refs.

UniProt Protein Scraper

parseforge/uniprot-protein-scraper

Query the UniProt knowledgebase with any free text search to retrieve protein entries with accession identifiers, names, gene symbols, organism, sequence length, and functional annotations. Useful for proteomics research, bioinformatics pipelines, and structural biology cross referencing.

Europe PMC — Biomedical Knowledge Graph & Literature Mining

ryanclinton/europe-pmc-search

Turn a biomedical topic into a knowledge graph and evidence corpus from Europe PMC. Mines genes, diseases, chemicals, organisms and deposited datasets (GEO, ENA, PDB) from full text, builds entity co-occurrence networks, tracks emerging entities, and exports Neo4j/Gephi CSV. No API key.

UniProt Proteins Scraper - Protein Metadata

benthepythondev/uniprot-proteins-scraper

Search UniProtKB and export accessions, protein and gene names, organisms, sequence length, molecular weight, keywords and links.

EBI Proteins API Scraper

parseforge/ebi-proteins-api-scraper

Tap the EMBL EBI Proteins API for curated protein entries filtered by protein name and organism. Returns accession identifiers, gene names, taxonomy, feature annotations, and sequence metadata. Useful for comparative genomics, interaction analysis, and protein function enrichment studies.

Ensembl Genomics Scraper (Genes, Variants, Sequences)

parseforge/ensembl-genomics-scraper

Query the Ensembl genome reference for 200+ species. Look up genes by symbol or stable ID, list features in a genomic region, fetch DNA sequence, or resolve human variants (rsIDs). Returns biotype, coordinates, transcript IDs, descriptions, and assembly metadata.

Pharos Target Druggability Scraper

parseforge/pharos-target-druggability-scraper

Look up drug-target druggability from the Pharos IDG knowledge base by gene symbol, or browse the top targets. Each record returns protein name, UniProt ID, target development level, protein family, novelty score, plus ligand and disease counts. Built for drug discovery and target triage.

HGNC Gene Symbols Scraper

parseforge/hgnc-gene-symbols-scraper

Query the HUGO Gene Nomenclature Committee database for approved human gene symbols, names, aliases, chromosomal location, gene family, RefSeq, Ensembl, OMIM, UniProt, and external links. Export to JSON, CSV, or Excel for bioinformatics, genomics research, and pharmaceutical pipelines.

RNAcentral Sequences Scraper

benthepythondev/rnacentral-sequences-scraper

Collect RNAcentral records and export url, description, md5, xrefs, length, rna type as structured JSON, CSV or Excel data.