Disease Ontology Terms Scraper

HPO Human Phenotype Ontology Scraper

parseforge/hpo-phenotypes-scraper

Search the Human Phenotype Ontology by keyword or HP ID and pull back terms with hpoId, name, definition, synonyms, parents, children, plus optional associated diseases and genes. Useful for rare disease research, clinical curation, and genomic variant annotation pipelines.

Mondo Disease Ontology Scraper

parseforge/mondo-disease-scraper

Pull harmonized disease terms from the Mondo Disease Ontology. Query a keyword or stream the full hierarchy and collect Mondo IDs, labels, definitions, synonyms, and cross references to OMIM, Orphanet, DOID, and MeSH. Useful for rare disease research, ontology mapping, and EHR coding.

EBI Ontology Lookup (OLS) Scraper

crawlerbros/ebi-ontology-scraper

Scrape the EMBL-EBI Ontology Lookup Service (OLS4) - 280+ biomedical and scientific ontologies. List ontologies, browse terms, or search across concepts by keyword. Returns labels, definitions, IRIs, synonyms and identifiers as clean JSON.

NCBI MeSH Scraper — Medical Vocabulary API for NLP

azureblue/ncbi-mesh-scraper

Search NCBI MeSH (Medical Subject Headings) via E-utilities. Returns canonical term, scope note definition, subheadings, year introduced and CAS registry number.

Europe PMC — Biomedical Knowledge Graph & Literature Mining

ryanclinton/europe-pmc-search

Turn a biomedical topic into a knowledge graph and evidence corpus from Europe PMC. Mines genes, diseases, chemicals, organisms and deposited datasets (GEO, ENA, PDB) from full text, builds entity co-occurrence networks, tracks emerging entities, and exports Neo4j/Gephi CSV. No API key.

HPO Human Phenotype Ontology Scraper

parseforge/hpo-phenotype-jax-scraper

Search the Human Phenotype Ontology from Jackson Laboratory for clinical phenotype terms. Returns HPO IDs, term names, definitions, synonyms, and parent classes. Useful for rare disease diagnostics, phenotype to gene mapping, and building structured clinical descriptors.

Orphanet Rare Diseases Scraper

parseforge/orphanet-rare-diseases-scraper

Pull rare disease records from Orphanet and Orphadata by ORPHAcode. Returns the preferred name, synonyms, disorder group, clinical definition, plus mappings to ICD-10, ICD-11, OMIM, UMLS, and MeSH. Useful for terminology mapping, health record enrichment, and rare disease research.

NCI Thesaurus Concept Scraper

parseforge/nci-thesaurus-concept-scraper

Pull biomedical and cancer concepts from the NCI Thesaurus via the NCI EVS REST API. Search by keyword or list NCIt codes to return preferred name, synonyms, definition, semantic type, status, and parent and child concepts. Great for ontology mapping and clinical research.

ClinicalTrials.gov Aggregator: Pharma & Biotech Intelligence

scrapepilot/clinicaltrials-gov-aggregator-pharma-biotech-intelligence

Professional extractor for ClinicalTrials.gov. Gather NCT IDs, trial titles, sponsor info, and recruitment status in clean JSON/Excel formats. Built-in Demo Mode, SSL bypass, and Residential Proxy support for pharma researchers. High-speed, reliable data for oncology, diabetes, and more.

Pharma Research & Clinical Trial Monitor

scrapemint/pubmed-clinical-trials-intelligence

Pull PubMed papers and ClinicalTrials.gov studies at scale. PMIDs, DOIs, abstracts, MeSH terms, NCT IDs, phases, sponsors, enrollment, primary outcomes, results. One row per record. Pay per row.