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EBI OLS Ontologies Scraper

Scrapes ontology terms from the EMBL-EBI Ontology Lookup Service API and returns each term as a flat row with its IRI, label, synonyms, description, and ontology source.

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from $19.00 / 1,000 results

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ParseForge

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EBI OLS Scraper - Ontology Terms & Metadata API Export API through CLI

The Apify CLI is the official tool that allows you to use EBI OLS Ontologies Scraper locally, providing convenience functions and automatic retries on errors.

Install Apify CLI

Using installation script (macOS/Linux):

$curl -fsSL https://apify.com/install-cli.sh | bash

Using installation script (Windows):

$irm https://apify.com/install-cli.ps1 | iex

Using Homebrew:

$brew install apify-cli

Using npm:

$npm install -g apify-cli

Other API clients include:

EBI OLS Ontologies Scraper API in Python

EBI OLS Ontologies Scraper API in JavaScript

EBI OLS Ontologies Scraper OpenAPI definition

EBI OLS Ontologies Scraper API

EBI Ontology Lookup Service Scraper

parseforge/ebi-ols-ontology-scraper

Scrapes ontology terms from the EBI Ontology Lookup Service and returns each term as a flat row with its IRI, label, ontology name, description, and synonyms.

ParseForge

EBI OLS Ontologies List Scraper

parseforge/ebi-ols-ontologies-list-scraper

Scrapes the complete list of ontologies from the EMBL-EBI Ontology Lookup Service and returns each one as a flat row with its ID, title, description, and namespace.

ParseForge

EBI Ontology Lookup (OLS) Scraper

crawlerbros/ebi-ontology-scraper

Scrape the EMBL-EBI Ontology Lookup Service (OLS4) - 280+ biomedical and scientific ontologies. List ontologies, browse terms, or search across concepts by keyword. Returns labels, definitions, IRIs, synonyms and identifiers as clean JSON.

Crawler Bros

HPO Phenotype Ontology Scraper

parseforge/hpo-phenotype-jax-scraper

Scrapes Human Phenotype Ontology terms by search query and returns each term as a flat row with ID, definition, synonyms, and disease associations.

ParseForge

Disease Ontology Terms Scraper

parseforge/disease-ontology-terms-scraper

Scrapes disease terms from the Disease Ontology by keyword or DOID. Returns each term as a flat row with synonyms, definitions, parent and child DOIDs, and cross-references.

ParseForge

Mondo Disease Ontology Scraper

parseforge/mondo-disease-scraper

Scrapes disease terms from the Mondo Disease Ontology by keyword or in bulk. Each row returns the Mondo ID, label, definition, synonyms, and cross-references to OMIM, Orphanet, and other ontologies.

ParseForge

EBI Proteins Scraper

benthepythondev/ebi-proteins-scraper

Collect EMBL-EBI Proteins API records and export id, dbreferences id, description, type, comments type, features type as structured JSON, CSV or Excel data.

Ben

EBI Biostudies Scraper

benthepythondev/ebi-biostudies-scraper

Collect EMBL-EBI BioStudies records and export title, type, views, accession, files, links as structured JSON, CSV or Excel data.

Ben

EBI Proteins API Scraper

parseforge/ebi-proteins-api-scraper

Collects protein metadata from the EBI Proteins API by protein name, organism, or both. Returns each protein as a flat row with accession, function annotations, and cross-references.

ParseForge

HPO Phenotypes Scraper

parseforge/hpo-phenotypes-scraper

Scrapes Human Phenotype Ontology terms by keyword or HPO ID, with optional disease and gene associations. Returns each phenotype as a flat row for export.

ParseForge