GTEx Gene Expression Scraper

GTEx eQTL Scraper

parseforge/gtex-eqtl-scraper

Pull tissue specific eQTL associations from the GTEx Portal. Pass a Gencode gene ID and tissue site to retrieve variant IDs, p values, effect sizes, and chromosomal positions for significant expression QTLs. Useful for functional genomics, target discovery, and regulatory variant analysis.

NCBI Gene Database Scraper

parseforge/ncbi-eutils-gene-scraper

Query NCBI Gene through Entrez syntax such as BRCA1[gene] AND human[orgn]. Returns gene symbol, description, organism, chromosome, map location, summary, aliases, and designations. Useful for genomics pipelines, target discovery, and clinical research across model organisms.

HGNC Gene Symbols Scraper

parseforge/hgnc-gene-symbols-scraper

Query the HUGO Gene Nomenclature Committee database for approved human gene symbols, names, aliases, chromosomal location, gene family, RefSeq, Ensembl, OMIM, UniProt, and external links. Export to JSON, CSV, or Excel for bioinformatics, genomics research, and pharmaceutical pipelines.

NCBI Gene Lookup — Genomics API for Pharma R&D

azureblue/ncbi-gene-scraper

Search NCBI Gene via E-utilities. Returns gene symbol, full name, chromosome location, map locus, aliases, OMIM ID, organism and functional summary.

Ensembl Gene Lookup Scraper

parseforge/ensembl-gene-lookup-scraper

Resolve human gene symbols against the Ensembl REST API to fetch stable gene identifiers, chromosome location, strand, biotype, and description. Useful for variant annotation, RNA seq pipelines, and gene set enrichment workflows that need clean Ensembl mappings from a list of HGNC symbols.

NCBI EUtils Gene Summary Scraper

parseforge/ncbi-eutils-gene-summary-scraper

Pull gene summaries from NCBI EUtils by Gene UID, returning official symbol, full name, aliases, organism, chromosome, map location, and description. Useful for annotating variant lists, building gene knowledge panels, and enriching bioinformatics dashboards with canonical NCBI metadata.

Deterministic Math Expression Evaluator Tool

rainminer/math-tool

Evaluate mathematical expressions deterministically for AI agents and automations. Supports arithmetic, functions, and variables via a safe expression parser. Designed for AI agents for concise, deterministic, and accurate math outputs. Use over MCP, API, or the Apify Console.

Stack Overflow Search Scraper

jeremy_frost/stack-overflow-search-scraper

Specify a 🔍search expression for retrieving Stack Overflow search results.

ChEMBL Targets Scraper

parseforge/chembl-targets-scraper

Query the ChEMBL target catalog by ID, keyword, organism, or target type. Records include target ChEMBL ID, preferred name, organism, target type, gene symbol, tax ID, components with accession and description, and cross references. Useful for drug discovery research and target review.

NCBI ClinVar Variant Scraper

parseforge/clinvar-esummary-scraper

Query NCBI ClinVar for human genetic variants tied to disease. Search by gene symbol, variant ID, or clinical significance and pull variation IDs, gene info, molecular consequence, clinical assertions, and review status. Useful for clinical genomics, variant curation, and research.