NCBI Gene Database Scraper

NCBI Gene Lookup — Genomics API for Pharma R&D

azureblue/ncbi-gene-scraper

Search NCBI Gene via E-utilities. Returns gene symbol, full name, chromosome location, map locus, aliases, OMIM ID, organism and functional summary.

NCBI Gene Summary Scraper

parseforge/ncbi-eutils-gene-summary-scraper

Fetches NCBI Gene summary records for a provided list of Gene UIDs and returns each gene's name, description, synonyms, organism, and full summary text in one flat row.

NCBI Gene Records Scraper

benthepythondev/ncbi-gene-records-scraper

Collect NCBI Gene records and export gene id, query, source, scraped at as structured JSON, CSV or Excel data.

Query NCBI databases (PubMed, Gene, Protein, SNPs) via the E-utilities API. Search biomedical literature, gene sequences, protein data, and genetic variants — no API key required.

Ensembl Gene Scraper - Gene IDs, Biotype & Location

ninhothedev/ensembl-scraper

$0.5/1K 🔥 Ensembl gene scraper! Gene IDs, biotype, chromosome location & description across species. No key. JSON, CSV, Excel or API in seconds. Power genomics pipelines ⚡

GTEx eQTL Scraper

parseforge/gtex-eqtl-scraper

Collects GTEx eQTL associations by Gencode gene ID and tissue site, returning each variant-gene pair as a flat row with p-value, normalized effect size, and gene symbol.

NCBI ClinVar Variants Scraper

parseforge/ncbi-clinvar-variants-scraper

Scrapes NCBI ClinVar for genetic variant records by gene, condition, or free-text query. Returns each variant as a flat row with clinical significance, review status, and associated conditions.

GTEx Gene Expression Scraper

parseforge/gtex-gene-expression-scraper

Collects median gene expression values from the GTEx portal for one or more HGNC gene symbols. Returns a row per tissue with TPM, read count, and sample size.

HGNC Gene Symbols Scraper

parseforge/hgnc-gene-symbols-scraper

Scrapes HGNC gene records by symbol, HGNC ID, Entrez ID, UniProt accession, or search. Returns approved symbols, aliases, previous symbols, and cross-references as flat rows.

NCBI dbSNP Variant Scraper

parseforge/dbsnp-esummary-scraper

Scrapes variant summary records from NCBI dbSNP for a given search term and returns each variant as a flat row with clinical significance, allele frequencies, gene mappings, and PubMed IDs.