Pricing

from $20.00 / 1,000 result items

PubChem Compound Scraper

Export chemical compound data from PubChem, the world's largest open chemistry database with 119M+ compounds. Look up by CID, name, SMILES, or InChIKey. Pull molecular formulas, weights, structures, synonyms, IUPAC names, and properties.

Pricing

from $20.00 / 1,000 result items

Rating

0.0

(0)

Developer

ParseForge

Actor stats

Bookmarked

Total users

Monthly active users

2 days ago

Last modified

Categories

Education

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You can access the PubChem Compound Scraper programmatically from your own applications by using the Apify API. You can also choose the language preference from below. To use the Apify API, you’ll need an Apify account and your API token, found in Integrations settings in Apify Console.

Python

JavaScript

CLI

OpenAPI

HTTP

MCP

1from apify_client import ApifyClient
2
3# Initialize the ApifyClient with your Apify API token
4# Replace '<YOUR_API_TOKEN>' with your token.
5client = ApifyClient("<YOUR_API_TOKEN>")
6
7# Prepare the Actor input
8run_input = {
9    "maxItems": 10,
10    "mode": "cid",
11    "identifiers": [
12        "2244",
13        "3672",
14        "1983",
15        "5793",
16        "2519",
17    ],
18    "properties": [
19        "MolecularFormula",
20        "MolecularWeight",
21        "CanonicalSMILES",
22        "IsomericSMILES",
23        "InChI",
24        "InChIKey",
25        "IUPACName",
26        "XLogP",
27        "ExactMass",
28        "TPSA",
29        "HBondDonorCount",
30        "HBondAcceptorCount",
31        "RotatableBondCount",
32    ],
33}
34
35# Run the Actor and wait for it to finish
36run = client.actor("parseforge/pubchem-compound-scraper").call(run_input=run_input)
37
38# Fetch and print Actor results from the run's dataset (if there are any)
39print("💾 Check your data here: https://console.apify.com/storage/datasets/" + run["defaultDatasetId"])
40for item in client.dataset(run["defaultDatasetId"]).iterate_items():
41    print(item)
42
43# 📚 Want to learn more 📖? Go to → https://docs.apify.com/api/client/python/docs/quick-start

PubChem Compound Scraper API in Python

The Apify API client for Python is the official library that allows you to use PubChem Compound Scraper API in Python, providing convenience functions and automatic retries on errors.

Install the apify-client

$pip install apify-client

Other API clients include:

PubChem Compound Scraper API in JavaScript

PubChem Compound Scraper API through CLI

PubChem Compound Scraper OpenAPI definition

PubChem Compound Scraper API

PubChem Chemical Compound Scraper

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Scrape molecules from EBI ChEMBL public API including SMILES, InChI, molecular properties (MW, logP, HBA, HBD, PSA, RTB), max phase, ATC classifications, oral/parenteral/topical flags, first approval, black box warning, prodrug and withdrawn flag. No API key required.

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Open Targets Platform Scraper

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Query Open Targets Platform GraphQL API for targets (genes), diseases, or drugs and return rich associations including drugs by disease, known drugs, indications, mechanisms of action, pathways, tractability and genetic constraint. No API key required.

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PubChem Compound - Chemical & Drug Data

pink_comic/pubchem-compound-search

Search PubChem for chemical compound data. Find compounds by name, formula, or structure. For chemists, pharma researchers, toxicologists, and materials scientists. Pay per result.

Ava Torres

Pubchem Scraper

fortuitous_pirate/pubchem-scraper

Fortuitous Pirate

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Retrieve official WOZ property values, full history with CAGR, land area, cadastral parcels and BAG building data for any Dutch address. Bulk-capable. No proxy or API key required.

Unfenced Group

FDA Orange Book Scraper

labrat011/fda-orange-book-scraper

Extract FDA Orange Book data — drug patent expirations, exclusivity periods, generic equivalents, and therapeutic equivalence ratings. No API key required.

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ChemicalBook Chemical Database Scraper

fortuitous_pirate/chemicalbook-scraper

Search ChemicalBook for chemical compounds. Extract CAS numbers, molecular formulas, properties, safety data, MSDS links, and supplier info. Essential for chemistry research and procurement.

Fortuitous Pirate

Instagram Story Details Scraper

louisdeconinck/instagram-story-details-scraper

Extract detailed Instagram stories data for data analysis, content monitoring, and competitor research. Does not require authentication or login. Fast & easy to use. Supports photo & video stories.