Pricing

from $7.50 / 1,000 results

UniProt Protein Scraper

Query the UniProt knowledgebase with any free text search to retrieve protein entries with accession identifiers, names, gene symbols, organism, sequence length, and functional annotations. Useful for proteomics research, bioinformatics pipelines, and structural biology cross referencing.

Pricing

from $7.50 / 1,000 results

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0.0

(0)

Developer

ParseForge

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Monthly active users

2 days ago

Last modified

Categories

Automation

Integrations

Education

You can access the UniProt Protein Scraper programmatically from your own applications by using the Apify API. You can also choose the language preference from below. To use the Apify API, you’ll need an Apify account and your API token, found in Integrations settings in Apify Console.

Python

JavaScript

CLI

OpenAPI

HTTP

MCP

1import { ApifyClient } from 'apify-client';
2
3// Initialize the ApifyClient with your Apify API token
4// Replace the '<YOUR_API_TOKEN>' with your token
5const client = new ApifyClient({
6    token: '<YOUR_API_TOKEN>',
7});
8
9// Prepare Actor input
10const input = {
11    "maxItems": 10
12};
13
14// Run the Actor and wait for it to finish
15const run = await client.actor("parseforge/uniprot-protein-scraper").call(input);
16
17// Fetch and print Actor results from the run's dataset (if any)
18console.log('Results from dataset');
19console.log(`💾 Check your data here: https://console.apify.com/storage/datasets/${run.defaultDatasetId}`);
20const { items } = await client.dataset(run.defaultDatasetId).listItems();
21items.forEach((item) => {
22    console.dir(item);
23});
24
25// 📚 Want to learn more 📖? Go to → https://docs.apify.com/api/client/js/docs

UniProt Protein Scraper API in JavaScript

The Apify API client for JavaScript is the official library that allows you to use UniProt Protein Scraper API in JavaScript or TypeScript, providing convenience functions and automatic retries on errors.

Install the apify-client

$npm install apify-client

Other API clients include:

UniProt Protein Scraper API in Python

UniProt Protein Scraper API through CLI

UniProt Protein Scraper OpenAPI definition

UniProt Protein Scraper API

UniProt Proteins Scraper

parseforge/uniprot-proteins-scraper

Query UniProt with its native syntax such as reviewed=true or organism_id 9606. Returns accession, protein name, organism, gene names, sequence, length, function, keywords, EC numbers, and reference count. Restrict to Swiss-Prot reviewed entries. Useful for proteomics and drug discovery.

ParseForge

UniProt Protein Sequence & Annotation Scraper

parseforge/uniprot-scraper

Export UniProt Knowledgebase entries — search Swiss-Prot by organism, keyword, gene, or any UniProt query, or fetch a single accession. Returns names, genes, organism, sequence length & molecular weight, keywords, comments, features, and PDB/RefSeq/Ensembl/KEGG cross-refs.

ParseForge

RCSB PDB Protein Structure Scraper

parseforge/rcsb-pdb-scraper

Scrape protein structure entries from the RCSB Protein Data Bank including title, authors, citation, experimental method (X-ray, EM, NMR), resolution, cell parameters, symmetry, polymer entities, keywords and entry metadata. No API key required.

ParseForge

EBI Proteins API Scraper

parseforge/ebi-proteins-api-scraper

Tap the EMBL EBI Proteins API for curated protein entries filtered by protein name and organism. Returns accession identifiers, gene names, taxonomy, feature annotations, and sequence metadata. Useful for comparative genomics, interaction analysis, and protein function enrichment studies.

ParseForge

Open Targets Platform Scraper

parseforge/open-targets-platform-scraper

Export drug, target, and disease intelligence from the Open Targets Platform. Pull 63,000+ targets, 20,000+ diseases, and 14,000+ drugs with association scores, tractability, mechanisms of action, clinical phase, and cross-references for drug discovery research.

ParseForge

HGNC Gene Symbols Scraper

parseforge/hgnc-gene-symbols-scraper

Query the HUGO Gene Nomenclature Committee database for approved human gene symbols, names, aliases, chromosomal location, gene family, RefSeq, Ensembl, OMIM, UniProt, and external links. Export to JSON, CSV, or Excel for bioinformatics, genomics research, and pharmaceutical pipelines.

ParseForge

Open Targets Platform Scraper

parseforge/opentargets-scraper

Query Open Targets Platform GraphQL API for targets (genes), diseases, or drugs and return rich associations including drugs by disease, known drugs, indications, mechanisms of action, pathways, tractability and genetic constraint. No API key required.

ParseForge

ChEMBL Molecules Scraper

parseforge/chembl-molecules-scraper

Scrape molecules from EBI ChEMBL public API including SMILES, InChI, molecular properties (MW, logP, HBA, HBD, PSA, RTB), max phase, ATC classifications, oral/parenteral/topical flags, first approval, black box warning, prodrug and withdrawn flag. No API key required.

ParseForge

RxNorm Drug Concepts Scraper (NLM)

parseforge/rxnorm-drug-concepts-scraper

Pull standardized US drug concepts from the NLM RxNorm API — search by name, fetch all relations for an RxCUI, or browse every concept of a term type (SBD, SCD, IN, BN, SY). Returns RxCUI, name, term type, synonyms, base ingredients, and dose form group.

ParseForge

ICD-10-CM, LOINC & Clinical Terminology Scraper (NLM)

parseforge/icd10-loinc-clinical-scraper

Query the NLM Clinical Tables API to export billable medical codes — ICD-10-CM diagnoses, LOINC lab observations, disease names, procedures, condition URIs, and drug classes. Free, no API key, exact NLM source data.

ParseForge