UniProt Proteins Scraper

UniProt Protein Scraper

parseforge/uniprot-protein-scraper

Query the UniProt knowledgebase with any free text search to retrieve protein entries with accession identifiers, names, gene symbols, organism, sequence length, and functional annotations. Useful for proteomics research, bioinformatics pipelines, and structural biology cross referencing.

UniProt Protein Sequence & Annotation Scraper

parseforge/uniprot-scraper

Export UniProt Knowledgebase entries — search Swiss-Prot by organism, keyword, gene, or any UniProt query, or fetch a single accession. Returns names, genes, organism, sequence length & molecular weight, keywords, comments, features, and PDB/RefSeq/Ensembl/KEGG cross-refs.

RCSB PDB Protein Structure Scraper

parseforge/rcsb-pdb-scraper

Scrape protein structure entries from the RCSB Protein Data Bank including title, authors, citation, experimental method (X-ray, EM, NMR), resolution, cell parameters, symmetry, polymer entities, keywords and entry metadata. No API key required.

EBI Proteins API Scraper

parseforge/ebi-proteins-api-scraper

Tap the EMBL EBI Proteins API for curated protein entries filtered by protein name and organism. Returns accession identifiers, gene names, taxonomy, feature annotations, and sequence metadata. Useful for comparative genomics, interaction analysis, and protein function enrichment studies.

Open Targets Platform Scraper

parseforge/open-targets-platform-scraper

Export drug, target, and disease intelligence from the Open Targets Platform. Pull 63,000+ targets, 20,000+ diseases, and 14,000+ drugs with association scores, tractability, mechanisms of action, clinical phase, and cross-references for drug discovery research.

HGNC Gene Symbols Scraper

parseforge/hgnc-gene-symbols-scraper

Query the HUGO Gene Nomenclature Committee database for approved human gene symbols, names, aliases, chromosomal location, gene family, RefSeq, Ensembl, OMIM, UniProt, and external links. Export to JSON, CSV, or Excel for bioinformatics, genomics research, and pharmaceutical pipelines.

Open Targets Platform Scraper

parseforge/opentargets-scraper

Query Open Targets Platform GraphQL API for targets (genes), diseases, or drugs and return rich associations including drugs by disease, known drugs, indications, mechanisms of action, pathways, tractability and genetic constraint. No API key required.

ChEMBL Molecules Scraper

parseforge/chembl-molecules-scraper

Scrape molecules from EBI ChEMBL public API including SMILES, InChI, molecular properties (MW, logP, HBA, HBD, PSA, RTB), max phase, ATC classifications, oral/parenteral/topical flags, first approval, black box warning, prodrug and withdrawn flag. No API key required.

RxNorm Drug Concepts Scraper (NLM)

parseforge/rxnorm-drug-concepts-scraper

Pull standardized US drug concepts from the NLM RxNorm API — search by name, fetch all relations for an RxCUI, or browse every concept of a term type (SBD, SCD, IN, BN, SY). Returns RxCUI, name, term type, synonyms, base ingredients, and dose form group.

ICD-10-CM, LOINC & Clinical Terminology Scraper (NLM)

parseforge/icd10-loinc-clinical-scraper

Query the NLM Clinical Tables API to export billable medical codes — ICD-10-CM diagnoses, LOINC lab observations, disease names, procedures, condition URIs, and drug classes. Free, no API key, exact NLM source data.