Pricing

from $28.12 / 1,000 results

UniProt Protein Sequence & Annotation Scraper

Scrapes UniProt protein entries by search query or accession and returns each one as a flat row with gene names, organism, sequence metadata, functional keywords, and optional full sequence string.

Pricing

from $28.12 / 1,000 results

Rating

0.0

(0)

Developer

ParseForge

Actor stats

Bookmarked

Total users

Monthly active users

17 days ago

Last modified

Categories

Education

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You can access the UniProt Protein Sequence & Annotation Scraper programmatically from your own applications by using the Apify API. You can also choose the language preference from below. To use the Apify API, you’ll need an Apify account and your API token, found in API & Integrations in Apify Console.

Python

JavaScript

CLI

OpenAPI

HTTP

MCP

1from apify_client import ApifyClient
2
3# Initialize the ApifyClient with your Apify API token
4# Replace '<YOUR_API_TOKEN>' with your token.
5client = ApifyClient("<YOUR_API_TOKEN>")
6
7# Prepare the Actor input
8run_input = {
9    "query": "reviewed:true AND organism_id:9606",
10    "maxItems": 10,
11    "fetchSequence": False,
12    "pageSize": 500,
13}
14
15# Run the Actor and wait for it to finish
16run = client.actor("parseforge/uniprot-scraper").call(run_input=run_input)
17
18# Fetch and print Actor results from the run's dataset (if there are any)
19print(f"💾 Check your data here: https://console.apify.com/storage/datasets/{run.default_dataset_id}")
20for item in client.dataset(run.default_dataset_id).iterate_items():
21    print(item)
22
23# 📚 Want to learn more 📖? Go to → https://docs.apify.com/api/client/python/docs/quick-start

UniProt Scraper - Protein Sequence & Annotation Data API API in Python

The Apify API client for Python is the official library that allows you to use UniProt Protein Sequence & Annotation Scraper API in Python, providing convenience functions and automatic retries on errors.

Install the apify-client

$pip install apify-client

Other API clients include:

UniProt Protein Sequence & Annotation Scraper API in JavaScript

UniProt Protein Sequence & Annotation Scraper API through CLI

UniProt Protein Sequence & Annotation Scraper OpenAPI definition

UniProt Protein Sequence & Annotation Scraper API

UniProt Protein Scraper

parseforge/uniprot-protein-scraper

Scrapes UniProt protein entries from a search query and returns each one as a flat row with accession, protein name, gene, organism, function, and sequence. No API key required.

ParseForge

UniProt Proteins Scraper

parseforge/uniprot-proteins-scraper

Scrapes UniProt protein entries by search query and returns each protein as a flat row with accession, names, gene, organism, sequence, and annotations.

ParseForge

UniProt Protein Scraper - Sequences, Genes & Function

ninhothedev/uniprot-scraper

$0.5/1K 🔥 UniProt protein scraper! Accession, protein name, gene, organism, function & sequence. No key. JSON, CSV, Excel or API in seconds. Power bioinformatics & drug discovery ⚡

ninhothedev

UniProt Proteins Scraper - Protein Metadata

benthepythondev/uniprot-proteins-scraper

Search UniProtKB and export accessions, protein and gene names, organisms, sequence length, molecular weight, keywords and links.

Ben

Uniprot Scraper

fortuitous_pirate/uniprot-scraper

Scrape UniProt protein knowledge base: 250M+ proteins including reviewed Swiss-Prot entries. Search by protein name, gene, organism. Free, no auth required.

Fortuitous Pirate

EBI Proteins API Scraper

parseforge/ebi-proteins-api-scraper

Collects protein metadata from the EBI Proteins API by protein name, organism, or both. Returns each protein as a flat row with accession, function annotations, and cross-references.

ParseForge

Uniprot Search Scraper

benthepythondev/uniprot-search-scraper

Collect UniProt search records and export id, value, database, key, source, scraped at as structured JSON, CSV or Excel data.

Ben

STRING Protein Interactions Scraper

parseforge/string-protein-interactions-scraper

Collects protein-protein interactions from the STRING database for a given list of identifiers and an NCBI taxon ID, returning each interaction as a flat row with combined and evidence scores.

ParseForge

InterPro Protein Families Scraper

parseforge/interpro-protein-families-scraper

Scrapes InterPro protein family entries by accession list or by browsing a chosen entry type. Each row returns the entry name, type, accession, source database, and source organism.

ParseForge