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Find the Datasets Behind a Research Field

Discover the GEO, ENA, PDB and UniProt datasets referenced across a biomedical topic, ranked by how often each is used, with co-occurring genes.

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Europe PMC — Biomedical Knowledge Graph & Literature Mining
Europe PMC — Biomedical Knowledge Graph & Literature Miningryanclinton/europe-pmc-search
Status
Access
Paper Title
Year
+6 fields
Text
Number
Boolean
List
Object

Input

Search Query(required):single cell RNA sequencing
Query Preset:datasets_available
Entity rollup records:true

Output fields

Status
Access
Paper Title
Year
Citations
Accessions
Entities
Journal
DOI
Europe PMC Link

How it works

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The Europe PMC — Biomedical Knowledge Graph & Literature Mining Actor is ready to run with the inputs already set for "Find the Datasets Behind a Research Field". Sign up or log in and you'll land in Apify Console with a copy of this exact task.

Start the "Find the Datasets Behind a Research Field" task

The Europe PMC — Biomedical Knowledge Graph & Literature Mining Actor will start running based on the input automatically. You can also change all the input fields, like search query, query preset, and more, to match your specific use case.

Receive the "Find the Datasets Behind a Research Field" output

Monitor the progress in real time. You will be notified as soon as your dataset is complete and ready for review. Each result includes data such as status, access, paper title, and more.

Integrate into your workflow

The final output is delivered in JSON, CSV, or Excel format, ready to be plugged into your workflow. You can also run the "Find the Datasets Behind a Research Field" task via API.

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