Extract Biomedical Entities for a RAG Corpus
Mine genes, diseases, chemicals and organisms from biomedical full text into a clean, compact structured dataset for RAG and agent retrieval.
Europe PMC — Biomedical Knowledge Graph & Literature Miningryanclinton/europe-pmc-search
Status
Access
Paper Title
Year
+6 fieldsTextNumberBooleanListObject
Input
Search Query(required):Alzheimers disease
Mine biological entities (full-text):true
Output Profile:compact
Output fields
Status
Access
Paper Title
Year
Citations
Accessions
Entities
Journal
DOI
Europe PMC Link
Sign up on Apify01
Create your Apify account to access the Europe PMC — Biomedical Knowledge Graph & Literature Mining.
Start the run02
The Actor will start running based on the input automatically.
Receive the output03
Monitor the progress in real-time. You will be notified as soon as your dataset is complete and ready for review.
Integrate into your workflow04
The final output is delivered in JSON, CSV, or Excel format, ready to be plugged into your workflow.
