Pricing

Pay per usage

Pharma Research & Clinical Trial Monitor

Pull PubMed papers and ClinicalTrials.gov studies at scale. PMIDs, DOIs, abstracts, MeSH terms, NCT IDs, phases, sponsors, enrollment, primary outcomes, results. One row per record. Pay per row.

Pricing

Pay per usage

Rating

0.0

(0)

Developer

Ken M

Actor stats

Bookmarked

Total users

Monthly active users

3 days ago

Last modified

Categories

Other

PubMed search queries

pubmedQueries

Optional

Free text or PubMed Entrez queries. Supports MeSH and field tags: "breast cancer"[MeSH], pembrolizumab[Title], 2024[PDAT]. Example: ["GLP-1 receptor agonist obesity", "CRISPR sickle cell"].

Type:array

Default:

[]

ClinicalTrials.gov search queries

clinicalTrialsQueries

Optional

Free text queries against ClinicalTrials.gov. Matches title, conditions, interventions, and sponsor fields. Example: ["alzheimer monoclonal antibody", "pediatric ADHD"].

Type:array

Default:

[]

Direct PubMed IDs

pmids

Optional

PMIDs to fetch directly. Skips search, enriches each one with full abstract, authors, MeSH terms, and references. Example: ["38523054", "39122189"].

Type:array

Default:

[]

Direct NCT IDs

nctIds

Optional

ClinicalTrials.gov NCT numbers to fetch directly. Example: ["NCT05123456", "NCT04999111"].

Type:array

Default:

[]

Published or updated from

dateFrom

Optional

ISO date (YYYY-MM-DD). For PubMed: publication date lower bound. For ClinicalTrials.gov: lastUpdatePostDate lower bound. Empty means no bound.

Type:string

Default:

Published or updated until

dateTo

Optional

ISO date (YYYY-MM-DD). Upper bound. Empty means no bound.

Type:string

Default:

PubMed publication types

publicationTypes

Optional

Restrict PubMed to specific publication types. Common: Clinical Trial, Randomized Controlled Trial, Meta-Analysis, Systematic Review, Review.

Type:array

Default:

[]

ClinicalTrials.gov status filter

studyStatus

Optional

Restrict trials to specific recruitment statuses. Empty means all statuses.

Type:string[]

Default:

[]

Trial phases

phases

Optional

Restrict trials to specific phases. Empty means all phases.

Type:string[]

Default:

[]

Trial study types

studyTypes

Optional

Restrict trials to specific study types. Empty means all study types.

Type:string[]

Default:

[]

Include full abstracts

fetchAbstracts

Optional

Include the full abstract text in each PubMed row. Adds one extra efetch call per query batch. On by default since abstracts are the most valuable field.

Type:boolean

Default:true

Include MeSH terms

fetchMeshTerms

Optional

Parse Medical Subject Heading terms from the PubMed XML record. Useful for topic clustering and indexing.

Type:boolean

Default:true

Include references and cited by

fetchReferences

Optional

For each PubMed paper, pull the reference list and citing PMIDs from NCBI ELink. Adds two extra requests per paper. Best with maxRecords <= 500.

Type:boolean

Default:false

Include trial results when available

fetchTrialResults

Optional

Include posted results (primary outcomes, adverse events) for completed trials. Only ~30% of trials post results. Adds the resultsSection field per row.

Type:boolean

Default:true

Max records per run

maxRecords

Optional

Hard cap on total rows pushed (PubMed papers + clinical trials combined). 0 means unlimited.

Type:integer

Minimum:0

Maximum:100000

Default:200

Max records per query

maxPerQuery

Optional

Cap per individual query before moving to the next. Stops one broad query from eating the entire budget.

Type:integer

Minimum:1

Maximum:10000

Default:100

NCBI API key (optional)

ncbiApiKey

Optional

Free NCBI API key from https://www.ncbi.nlm.nih.gov/account. Without a key: 3 PubMed requests per second. With a key: 10 per second. Recommended for runs over 500 records.

Type:string

Contact email (optional)

Optional

NCBI requests an identifying email for E-utilities calls. Used in the User-Agent. No marketing.

Type:string

Default:

Deduplicate across runs

dedupe

Optional

Skip PMIDs and NCT IDs already pushed in previous runs. Use for daily incremental scrapes. Turn off to refresh stale rows.

Type:boolean

Default:true

Delay between requests (ms)

navigationDelayMs

Optional

Pause between API calls. NCBI rate limits at 3 per second without a key. Default of 350 ms keeps you well under the limit.

Type:integer

Minimum:0

Maximum:10000

Default:350

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