UniProt Proteins Scraper - Protein Metadata

Scrape UniProt protein knowledge base: 250M+ proteins including reviewed Swiss-Prot entries. Search by protein name, gene, organism. Free, no auth required.

UniProt Protein Sequence & Annotation Scraper

parseforge/uniprot-scraper

Export UniProt Knowledgebase entries — search Swiss-Prot by organism, keyword, gene, or any UniProt query, or fetch a single accession. Returns names, genes, organism, sequence length & molecular weight, keywords, comments, features, and PDB/RefSeq/Ensembl/KEGG cross-refs.

EBI Proteins API Scraper

parseforge/ebi-proteins-api-scraper

Tap the EMBL EBI Proteins API for curated protein entries filtered by protein name and organism. Returns accession identifiers, gene names, taxonomy, feature annotations, and sequence metadata. Useful for comparative genomics, interaction analysis, and protein function enrichment studies.

UniProt Protein Scraper

parseforge/uniprot-protein-scraper

Query the UniProt knowledgebase with any free text search to retrieve protein entries with accession identifiers, names, gene symbols, organism, sequence length, and functional annotations. Useful for proteomics research, bioinformatics pipelines, and structural biology cross referencing.

UniProt Proteins Scraper

parseforge/uniprot-proteins-scraper

Query UniProt with its native syntax such as reviewed=true or organism_id 9606. Returns accession, protein name, organism, gene names, sequence, length, function, keywords, EC numbers, and reference count. Restrict to Swiss-Prot reviewed entries. Useful for proteomics and drug discovery.

Query NCBI databases (PubMed, Gene, Protein, SNPs) via the E-utilities API. Search biomedical literature, gene sequences, protein data, and genetic variants — no API key required.

RCSB Protein Data Bank Scraper. Structured data export for lead generation, enrichment, and competitive research.

Monitor protein structure releases and revisions across RCSB PDB, PDBe, AlphaFold DB, and UniProt with durable baselines and evidence-backed diffs.

Resolve protein structure evidence across RCSB PDB, PDBe, AlphaFold DB, and UniProt with source provenance, conflicts, and downloadable artifacts.

RCSB PDB Protein Structure Scraper

parseforge/rcsb-pdb-scraper

Scrape protein structure entries from the RCSB Protein Data Bank including title, authors, citation, experimental method (X-ray, EM, NMR), resolution, cell parameters, symmetry, polymer entities, keywords and entry metadata. No API key required.