You can access the Ncbi Gene Search programmatically from your own applications by using the Apify API. You can also choose the language preference from below. To use the Apify API, you’ll need an Apify account and your API token, found in Integrations settings in Apify Console.

Python

JavaScript

CLI

OpenAPI

HTTP

MCP

1from apify_client import ApifyClient
2
3# Initialize the ApifyClient with your Apify API token
4# Replace '<YOUR_API_TOKEN>' with your token.
5client = ApifyClient("<YOUR_API_TOKEN>")
6
7# Prepare the Actor input
8run_input = {}
9
10# Run the Actor and wait for it to finish
11run = client.actor("consummate_mandala/ncbi-gene-search").call(run_input=run_input)
12
13# Fetch and print Actor results from the run's dataset (if there are any)
14print("💾 Check your data here: https://console.apify.com/storage/datasets/" + run["defaultDatasetId"])
15for item in client.dataset(run["defaultDatasetId"]).iterate_items():
16    print(item)
17
18# 📚 Want to learn more 📖? Go to → https://docs.apify.com/api/client/python/docs/quick-start

Ncbi Gene Search API in Python

The Apify API client for Python is the official library that allows you to use Ncbi Gene Search API in Python, providing convenience functions and automatic retries on errors.

Install the apify-client

$pip install apify-client

Other API clients include:

Ncbi Gene Search API in JavaScript

Ncbi Gene Search API through CLI

Ncbi Gene Search OpenAPI definition

Ncbi Gene Search API

Ncbi Gene Search

urban_quidnunc/ncbi-gene-search

Ncbi Gene Search - Extracts and processes data efficiently on the Apify platform.

Donny

PubMed & ClinicalTrials MCP Server — Biomedical AI

aligned_kettledrum/pubmed-mcp-server

MCP server providing AI agents with access to PubMed (37M+ articles) and ClinicalTrials.gov (500K+ studies). Search biomedical literature, fetch abstracts, and find clinical trials with structured data. Supports date filtering, status filtering, and batch PMID lookups.

kettledrum

Academic Paper Scraper

constant_quadruped/academic-paper-scraper

Search arXiv and PubMed in one request. Returns unified paper data: titles, authors, abstracts, DOIs, and PDF links. Filter by keywords, authors, categories, and date range. Built-in rate limiting and cross-source deduplication. Export to JSON, CSV, or Excel.

Pubmed Citation Scraper

parseforge/pubmed-citation-scraper

Automate collection of detailed citation information from the world's largest biomedical literature database. Extract complete citation data including titles, authors, abstracts, publication dates, journals, DOIs, MeSH terms, and more from NCBI's PubMed database.

ParseForge

5.0

(1)

Clinvar Variant Scraper

brave_paradise/clinvar-variant-scraper

Scrapes clinical genetic variant data from the NCBI ClinVar API.

Donny

Scenic Bypass: The Master Bridge

expedient_junior/scenic-bypass

Scenic Bypass: The financial Infrastructure Engine. 185 Modes. One API. Bridges the Old World (SWIFT, SS7, CIPS) with the New World (Flash Loans, IPFS, AI). Powered by Self-Healing Negentropy Logic. Try the 24-Day Gold Cycle. Build the bypass.

michael laurence curzi jolly dragon roger

Instagram Reels Scraper

scraper-engine/instagram-reels-scraper

Instagram Reels Scraper lets you extract reels data quickly and efficiently. Gather video URLs, captions, hashtags, likes, views, comments, and user profiles. Ideal for research, analytics, and trend tracking with fast, reliable, and easy automation.

Scraper Engine

134

4.5

(8)

PubMed Biomedical Literature Search

ryanclinton/pubmed-research-search

Search 37M+ biomedical articles via PubMed/NCBI. Filter by keyword, author, journal, article type, date. Returns titles, authors, DOIs, journals, publication types, PubMed URLs. Free NCBI API, no key needed.

ryan clinton

Uniprot Protein Search

urban_quidnunc/uniprot-protein-search

Search UniProt protein database. Returns protein accessions, names, organisms, sequence lengths, and gene names.

Donny

Research Grant Aggregator

constant_quadruped/research-grant-aggregator

Search NIH, NSF, Grants.gov & USASpending in one query. Get unified grant data with PI names, award amounts, organizations & keywords. Perfect for universities, grant writers, VCs tracking funded research. No API keys needed—all public federal data.