cBioPortal Cancer Genomics Scraper

cBioPortal Cancer Genomics Extractor

datamule/cbioportal-cancer-genomics-extractor

Point at ANY cBioPortal instance (the MSKCC flagship, BCGSC, GENIE, institutional mirrors) and pull cancer-genomics metadata: studies, the OncoTree cancer-type taxonomy, molecular profiles, and genes. One actor, the whole cBioPortal REST API, every row lossless.

NCI GDC Cancer Genomics Scraper

parseforge/nci-gdc-cancer-scraper

Scrapes NCI Genomic Data Commons public endpoints for projects, cases, files, or annotations. Returns flat records with filters for primary site and program.

Beacon v2 Genomics Extractor

datamule/beacon-v2-genomics-extractor

Point at ANY GA4GH Beacon v2 endpoint (Progenetix, Cancer Cell Lines, ELIXIR/BSC) and pull biosamples, individuals, genomic variants, cohorts, datasets or filtering terms into clean flat rows. Auto-detects skip/limit paging, keeps the full record in _raw. Pay per record.

DataCite Metadata Scraper

parseforge/datacite-metadata-scraper

Scrapes DataCite metadata records by search term, repository, publisher, resource type, year, or specific DOI. Returns each record as a flat row with DOI, title, creator, publisher, and publication year.

Harvard Catalyst Profiles Scraper

futurizerush/harvard-catalyst-profiles-scraper

Extracts researcher contact details from the Harvard Catalyst Profiles directory.

NCBI Gene Lookup — Genomics API for Pharma R&D

azureblue/ncbi-gene-scraper

Search NCBI Gene via E-utilities. Returns gene symbol, full name, chromosome location, map locus, aliases, OMIM ID, organism and functional summary.

bioRxiv + medRxiv Scraper for RAG

getascraper/biorxiv-medrxiv-rag-extractor

Scrape bioRxiv and medRxiv preprints by server, category, and date range. Returns RAG-ready JSON with JATS full-text chunks (cl100k_base, 512/50) when available and abstract fallback otherwise. Drop-in for LangChain, LlamaIndex, Qdrant, Pinecone, Weaviate, pgvector.

bioRxiv & medRxiv Preprint Scraper

crawlerbros/biorxiv-medrxiv-scraper

Scrape preprints from bioRxiv and medRxiv with the leading open-access preprint servers for biology and medicine. Search by date range, fetch by DOI, or retrieve published journal version information.

Cellosaurus Cell Lines Scraper

ninhothedev/cellosaurus-scraper

$0.5/1K 🔥 Cellosaurus Cells! Look up cell lines with origin, disease & cross-references. No key. JSON, CSV, Excel or API in seconds. Verify cell-line identity for lab research ⚡

NCBI Gene Summary Scraper

parseforge/ncbi-eutils-gene-summary-scraper

Fetches NCBI Gene summary records for a provided list of Gene UIDs and returns each gene's name, description, synonyms, organism, and full summary text in one flat row.