EBI Proteins API Scraper

ChEMBL Molecules Scraper

parseforge/chembl-molecules-scraper

Scrape molecules from EBI ChEMBL public API including SMILES, InChI, molecular properties (MW, logP, HBA, HBD, PSA, RTB), max phase, ATC classifications, oral/parenteral/topical flags, first approval, black box warning, prodrug and withdrawn flag. No API key required.

UniProt Protein Sequence & Annotation Scraper

parseforge/uniprot-scraper

Export UniProt Knowledgebase entries — search Swiss-Prot by organism, keyword, gene, or any UniProt query, or fetch a single accession. Returns names, genes, organism, sequence length & molecular weight, keywords, comments, features, and PDB/RefSeq/Ensembl/KEGG cross-refs.

ChEMBL Targets Scraper

parseforge/chembl-targets-scraper

Query the ChEMBL target catalog by ID, keyword, organism, or target type. Records include target ChEMBL ID, preferred name, organism, target type, gene symbol, tax ID, components with accession and description, and cross references. Useful for drug discovery research and target review.

Open Targets Platform Scraper

parseforge/opentargets-scraper

Query Open Targets Platform GraphQL API for targets (genes), diseases, or drugs and return rich associations including drugs by disease, known drugs, indications, mechanisms of action, pathways, tractability and genetic constraint. No API key required.

Europe PMC Literature Scraper

parseforge/europepmc-scraper

Scrape Europe PMC for biomedical research papers. Search by title, author, MeSH terms, journal. Get DOI, abstract, full-text URLs, citations, references, open-access status. No API key required.

Ensembl Genomics Scraper (Genes, Variants, Sequences)

parseforge/ensembl-genomics-scraper

Query the Ensembl genome reference for 200+ species. Look up genes by symbol or stable ID, list features in a genomic region, fetch DNA sequence, or resolve human variants (rsIDs). Returns biotype, coordinates, transcript IDs, descriptions, and assembly metadata.

HGNC Gene Symbols Scraper

parseforge/hgnc-gene-symbols-scraper

Query the HUGO Gene Nomenclature Committee database for approved human gene symbols, names, aliases, chromosomal location, gene family, RefSeq, Ensembl, OMIM, UniProt, and external links. Export to JSON, CSV, or Excel for bioinformatics, genomics research, and pharmaceutical pipelines.

IntAct Molecular Interactions Scraper

parseforge/intact-interactions-scraper

Search the EMBL EBI IntAct database for curated molecular interaction evidence. Query by gene or protein name and retrieve interactor pairs, interaction types, detection methods, source publication IDs, and confidence scores. Useful for systems biology and interactome research.

ChEMBL Assays Scraper

parseforge/chembl-assays-scraper

Query the ChEMBL assay catalog by assay ID, target, keyword, type, organism, or confidence score. Records carry assay ID, description, type, category, organism, strain, tissue, target, document, confidence score, BAO label, and relationship type. Useful for drug discovery research.

Vital Proteins Scraper

mshopik/vital-proteins-scraper

Scrape Vital Proteins and extract data on vitamins and supplements from vitalproteins.com. Our Vital Proteins API lets you crawl product information and pricing. The saved data can be downloaded as HTML, JSON, CSV, Excel, and XML.