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Ensembl Genomics Scraper

Scrapes Ensembl gene annotations, variant consequences, and DNA sequences by symbol, stable ID, region, or rsID. Returns each record as a flat row for 20 reference species.

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from $18.00 / 1,000 result items

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ParseForge

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Ensembl Scraper - Gene, Variant & Sequence Data API API through CLI

The Apify CLI is the official tool that allows you to use Ensembl Genomics Scraper locally, providing convenience functions and automatic retries on errors.

Install Apify CLI

Using installation script (macOS/Linux):

$curl -fsSL https://apify.com/install-cli.sh | bash

Using installation script (Windows):

$irm https://apify.com/install-cli.ps1 | iex

Using Homebrew:

$brew install apify-cli

Using npm:

$npm install -g apify-cli

Other API clients include:

Ensembl Genomics Scraper API in Python

Ensembl Genomics Scraper API in JavaScript

Ensembl Genomics Scraper OpenAPI definition

Ensembl Genomics Scraper API

Ensembl Gene Scraper - Gene IDs, Biotype & Location

ninhothedev/ensembl-scraper

$0.5/1K 🔥 Ensembl gene scraper! Gene IDs, biotype, chromosome location & description across species. No key. JSON, CSV, Excel or API in seconds. Power genomics pipelines ⚡

ninhothedev

Ensembl Gene Lookup Scraper

parseforge/ensembl-gene-lookup-scraper

Looks up human gene symbols on Ensembl and returns stable IDs, biotype, chromosome location, and description as flat rows. Feed it a list of symbols and get structured data for bioinformatics pipelines.

ParseForge

Ensembl Species Scraper - Genome Assembly Metadata

benthepythondev/ensembl-species-scraper

Search Ensembl species metadata and export taxonomy, assembly, accession, division, aliases, release and data groups.

Ben

Reactome Pathways Scraper

parseforge/reactome-pathways-scraper

Scrapes Reactome pathway records by search term, stable ID, or species, and returns each record as a flat row with stable ID, name, type, and species.

ParseForge

NCBI Gene Database Scraper

parseforge/ncbi-eutils-gene-scraper

Scrapes NCBI Gene records by Entrez query and returns each gene as a flat row with identifier, symbol, name, location, aliases, OMIM ID, organism, and functional summary.

ParseForge

NCBI Gene Lookup — Genomics API for Pharma R&D

azureblue/ncbi-gene-scraper

Search NCBI Gene via E-utilities. Returns gene symbol, full name, chromosome location, map locus, aliases, OMIM ID, organism and functional summary.

azureblue

GTEx eQTL Scraper

parseforge/gtex-eqtl-scraper

Collects GTEx eQTL associations by Gencode gene ID and tissue site, returning each variant-gene pair as a flat row with p-value, normalized effect size, and gene symbol.

ParseForge

NCBI Gene Summary Scraper

parseforge/ncbi-eutils-gene-summary-scraper

Fetches NCBI Gene summary records for a provided list of Gene UIDs and returns each gene's name, description, synonyms, organism, and full summary text in one flat row.

ParseForge

NCBI Gene Records Scraper

benthepythondev/ncbi-gene-records-scraper

Collect NCBI Gene records and export gene id, query, source, scraped at as structured JSON, CSV or Excel data.

Ben

NCBI dbSNP Variant Scraper

parseforge/dbsnp-esummary-scraper

Scrapes variant summary records from NCBI dbSNP for a given search term and returns each variant as a flat row with clinical significance, allele frequencies, gene mappings, and PubMed IDs.

ParseForge