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PubMed Citation Scraper

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Scrapes PubMed citations and abstracts by search query, author, journal, or direct URL. Returns each paper's title, authors, abstract, and publication metadata as a flat row.

Pricing

from $8.00 / 1,000 results

Rating

5.0

(1)

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ParseForge

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Monthly active users

9 days ago

Last modified

PubMed Scraper - Citation, Abstract & Metadata Extraction API through CLI

The Apify CLI is the official tool that allows you to use PubMed Citation Scraper locally, providing convenience functions and automatic retries on errors.

Install Apify CLI

Using installation script (macOS/Linux):

$curl -fsSL https://apify.com/install-cli.sh | bash

Using installation script (Windows):

$irm https://apify.com/install-cli.ps1 | iex

Using Homebrew:

$brew install apify-cli

Using npm:

$npm install -g apify-cli

Other API clients include:

PubMed Citation Scraper API in Python

PubMed Citation Scraper API in JavaScript

PubMed Citation Scraper OpenAPI definition

PubMed Citation Scraper API

PubMed Scraper — Bulk Abstracts API for Pharma R&D

azureblue/pubmed-abstract-scraper

Scrape PubMed abstracts by keyword with optional date filtering. Returns title, authors, DOI, abstract, journal, and publication date as structured JSON.

azureblue

Pubmed Research Scraper

fortuitous_pirate/pubmed-research-scraper

Search and extract biomedical research papers from PubMed (NCBI). Filter by keyword, journal, author, or date range. Returns paper title, authors, journal, publication date, DOI, and citation count. Free NCBI API — no authentication required.

Fortuitous Pirate

PubMed Scraper — Abstracts, Authors & MeSH Terms

logiover/pubmed-scraper

Scrape PubMed by keyword query or direct PMIDs. Extract title, abstract, authors, journal, DOI, MeSH terms, keywords, and publication date via NCBI E-utilities. No API key required.

Logiover

PubMed Articles Scraper

neuton/pubmed-articles-scraper

Search PubMed articles by query or PMID and export titles, abstracts, journals, publication dates, authors, DOI, MeSH terms, publication types, and PubMed URLs using NCBI E-utilities.

Neuton Scripts

PubMed Scraper — Papers, DOI & MeSH to JSON

devilscrapes/pubmed-papers-scraper

Search PubMed by query and export structured paper rows — title, authors, abstract, journal, DOI, PMID, MeSH terms, publication date — to JSON or CSV. A clean PubMed API wrapper that handles NCBI pagination, rate limits, and retries for research and ML pipelines.

DevilScrapes

🧬 PubMed Scraper - Biomedical Literature & Citations

benthepythondev/pubmed-scraper

PubMed Scraper for the official NCBI PubMed API. Search 37M+ biomedical citations; extract title, authors, journal, publication date, DOI, PMID, article type and links. Supports PubMed field tags and sorting. For systematic reviews, medical research and bibliometrics. Keyless and fast.

Ben

Pubmed Data Extractor

kawsar/pubmed-data-extractor

PubMed Data Extractor scrapes PubMed search results by keyword, so you get titles, authors, journals, DOIs, and abstracts as clean, exportable data in seconds.

Kawsar

PubMed Scraper — Bulk Biomedical Papers, Abstracts & Metadata

hipersoft/pubmed-scraper

Bulk-scrape PubMed's 35M+ biomedical articles: title, abstract, authors, journal, publication date, DOI, PMC ID, MeSH terms and keywords. Full PubMed query syntax, date filters, thousands of results per run. Powered by NCBI E-utilities. No setup.

hiper soft

PubMed Scraper API - Articles, Abstracts & Authors

pink_comic/pubmed-article-search

Search official NCBI PubMed E-utilities by query, title, author, journal, date, type, and language. Returns bounded source-linked biomedical bibliography records and optional abstracts with explicit evidence limits.

Ava Torres

PubMed Daily Citations Tracker — by Query

v0iddo/pubmed-daily-citations-tracker

Pull daily-new PubMed citations matching any query. One clean row per article — PMID, title, abstract, authors, journal, year, DOI, MeSH terms, full Pubmed URL. Built for cron: pass `sinceDays:1` to get just yesterday's new articles. Source: NCBI E-utilities (free, no auth).