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Pubchem Compound Scraper

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PubChem Compound Scraper is a Python tool designed to query the NIH PubChem PUG REST API. It extracts chemical structures, molecular properties, identifiers (CIDs), and safety summaries into structured formats for chemical and pharmaceutical research

Pricing

from $2.99 / 1,000 results

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0.0

(0)

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real-estate-api

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Monthly active users

3 days ago

Last modified

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Compound names

names

Optional

Compound names to look up on PubChem, one name per line. Aspirin is the default so a first run returns a real record.

Type:array

Default:

[
  "aspirin"
]

Example:

[
  "aspirin",
  "caffeine"
]

PubChem CIDs

cids

Optional

PubChem compound IDs (CIDs) to look up. Leave empty to search by name only. Digits only, one CID per line.

Type:array

Default:

[]

Example:

[
  "2244"
]

Include synonyms

includeSynonyms

Optional

Also fetch the synonym list for each CID that is returned. Off by default because some compounds have very long synonym lists.

Type:boolean

Default:false

Max items

maxItems

Optional

Maximum number of compound records to save. Free cap, hard max 1000.

Type:integer

Minimum:1

Maximum:1000

Default:100

Timeout seconds

timeoutSecs

Optional

Maximum seconds the run may spend fetching compounds before it stops and saves what it has.

Type:integer

Minimum:30

Maximum:3600

Default:300

Request timeout seconds

requestTimeoutSecs

Optional

Seconds to wait for a single PubChem response before retrying that request.

Type:integer

Minimum:5

Maximum:120

Default:30

Proxy configuration

proxyConfiguration

Optional

Optional proxy for PubChem requests. Default is no proxy, which matches the public PUG REST service. Turn on Apify Proxy only if your network blocks NCBI.

Type:object

Default:

{
  "useApifyProxy": false
}

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