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ClinVar Genetic Variants Scraper — Variant Pathogenicity Data

Extract genetic variants from NCBI ClinVar. Filter by gene and pathogenicity. Get clinical significance, associated conditions, protein change, molecular consequence, and GRCh38 coordinates as JSON or CSV.

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from $3.00 / 1,000 results

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ClinVar Genetic Variants Scraper — Variant Pathogenicity Data API through CLI

The Apify CLI is the official tool that allows you to use ClinVar Genetic Variants Scraper — Variant Pathogenicity Data locally, providing convenience functions and automatic retries on errors.

Install Apify CLI

Using installation script (macOS/Linux):

$curl -fsSL https://apify.com/install-cli.sh | bash

Using installation script (Windows):

$irm https://apify.com/install-cli.ps1 | iex

Using Homebrew:

$brew install apify-cli

Using npm:

$npm install -g apify-cli

Other API clients include:

ClinVar Genetic Variants Scraper — Variant Pathogenicity Data API in Python

ClinVar Genetic Variants Scraper — Variant Pathogenicity Data API in JavaScript

ClinVar Genetic Variants Scraper — Variant Pathogenicity Data OpenAPI definition

ClinVar Genetic Variants Scraper — Variant Pathogenicity Data API

NCBI ClinVar Variant Scraper

parseforge/clinvar-esummary-scraper

Query NCBI ClinVar for human genetic variants tied to disease. Search by gene symbol, variant ID, or clinical significance and pull variation IDs, gene info, molecular consequence, clinical assertions, and review status. Useful for clinical genomics, variant curation, and research.

ParseForge

NCBI ClinVar Variants Scraper - Genetic Variation Data

parseforge/ncbi-clinvar-variants-scraper

Sweep medical and biomedical records from Ncbi Clinvar Variants with names, identifiers, classifications, descriptions, status and source links. Ideal for healthcare research, pharma teams and clinical analytics. Run on demand or on a recurring schedule and feed every row into your favourite anal.

ParseForge

NCBI dbSNP Variant Scraper

parseforge/dbsnp-esummary-scraper

Search NCBI dbSNP for short genetic variants by gene symbol or rs ID. Returns rs accession, chromosome position, allele info, gene context, and global minor allele frequencies. Useful for GWAS pipelines, variant annotation, population genetics, and pharmacogenomics work.

ParseForge

Clinical Trial Multi-Source Aggregator

parseforge/clinical-trial-multi-source-scraper

Search active and historical clinical trials across the EU CTIS, WHO, openFDA and ClinVar variants in one query. Pull trial IDs, sponsors, phases, conditions, locations, status and outcome data. Built for pharma research, patient navigators and biotech analysts.

ParseForge

NCBI EUtils Gene Summary Scraper

parseforge/ncbi-eutils-gene-summary-scraper

Pull gene summaries from NCBI EUtils by Gene UID, returning official symbol, full name, aliases, organism, chromosome, map location, and description. Useful for annotating variant lists, building gene knowledge panels, and enriching bioinformatics dashboards with canonical NCBI metadata.

ParseForge

NCBI Gene Database Scraper

parseforge/ncbi-eutils-gene-scraper

Query NCBI Gene through Entrez syntax such as BRCA1[gene] AND human[orgn]. Returns gene symbol, description, organism, chromosome, map location, summary, aliases, and designations. Useful for genomics pipelines, target discovery, and clinical research across model organisms.

ParseForge

NCBI dbSNP Variants Scraper

parseforge/ncbi-dbsnp-variants-scraper

Discover medical and biomedical records from Ncbi Dbsnp Variants with names, identifiers, classifications, descriptions, status and source links. Ideal for healthcare research, pharma teams and clinical analytics. Run on demand or on a recurring schedule and feed every row into your favourite ana.

ParseForge

NCBI Gene Lookup — Genomics API for Pharma R&D

azureblue/ncbi-gene-scraper

Search NCBI Gene via E-utilities. Returns gene symbol, full name, chromosome location, map locus, aliases, OMIM ID, organism and functional summary.

azureblue

IntAct Molecular Interactions Scraper

parseforge/intact-interactions-scraper

Search the EMBL EBI IntAct database for curated molecular interaction evidence. Query by gene or protein name and retrieve interactor pairs, interaction types, detection methods, source publication IDs, and confidence scores. Useful for systems biology and interactome research.

ParseForge