EBI OLS Ontologies List Scraper

EBI Ontology Lookup Service Scraper

parseforge/ebi-ols-ontology-scraper

Browse the EBI Ontology Lookup Service catalogue of biomedical ontologies. Returns ontology id, title, description, term count, property count, version, homepage, and namespace. Useful for bioinformatics tooling, ontology alignment, and semantic research across life science domains.

EBI OLS Ontologies Scraper

parseforge/ebi-ols-ontologies-scraper

Discover structured records from Ebi Ols Ontologies with names, identifiers, dates, descriptions, status flags and source links. Ideal for research, intelligence and operational dashboards. Run on demand or on a recurring schedule and feed every row into your favourite analytics or workflow stack.

Mondo Disease Ontology Scraper

parseforge/mondo-disease-scraper

Pull harmonized disease terms from the Mondo Disease Ontology. Query a keyword or stream the full hierarchy and collect Mondo IDs, labels, definitions, synonyms, and cross references to OMIM, Orphanet, DOID, and MeSH. Useful for rare disease research, ontology mapping, and EHR coding.

HPO Human Phenotype Ontology Scraper

parseforge/hpo-phenotypes-scraper

Search the Human Phenotype Ontology by keyword or HP ID and pull back terms with hpoId, name, definition, synonyms, parents, children, plus optional associated diseases and genes. Useful for rare disease research, clinical curation, and genomic variant annotation pipelines.

EBI Proteins API Scraper

parseforge/ebi-proteins-api-scraper

Tap the EMBL EBI Proteins API for curated protein entries filtered by protein name and organism. Returns accession identifiers, gene names, taxonomy, feature annotations, and sequence metadata. Useful for comparative genomics, interaction analysis, and protein function enrichment studies.

HPO Human Phenotype Ontology Scraper

parseforge/hpo-phenotype-jax-scraper

Search the Human Phenotype Ontology from Jackson Laboratory for clinical phenotype terms. Returns HPO IDs, term names, definitions, synonyms, and parent classes. Useful for rare disease diagnostics, phenotype to gene mapping, and building structured clinical descriptors.

NLM MeSH SPARQL Scraper

parseforge/mesh-sparql-scraper

Pull terms from the NLM Medical Subject Headings SPARQL endpoint by release year and optional label substring. Returns descriptor URIs, preferred labels, tree numbers, scope notes, and concept relationships. Useful for biomedical indexing, literature search tooling, and ontology alignment.

IntAct Molecular Interactions Scraper

parseforge/intact-interactions-scraper

Search the EMBL EBI IntAct database for curated molecular interaction evidence. Query by gene or protein name and retrieve interactor pairs, interaction types, detection methods, source publication IDs, and confidence scores. Useful for systems biology and interactome research.

BioModels Models Scraper

parseforge/biomodels-models-scraper

Search the EMBL EBI BioModels repository with any free text query for published systems biology models. Returns model identifier, name, publication, authors, format, and submission date. Useful for computational biology research, model reuse, and SBML simulation pipeline bootstrapping.

Semantic Scholar Search Scraper

powerai/semantic-scholar-search-scraper

Scrape academic papers from Semantic Scholar by keyword search, with automatic pagination and comprehensive research data extraction.