NCBI Gene Database Scraper

NCBI Gene Lookup — Genomics API for Pharma R&D

azureblue/ncbi-gene-scraper

Search NCBI Gene via E-utilities. Returns gene symbol, full name, chromosome location, map locus, aliases, OMIM ID, organism and functional summary.

NCBI EUtils Gene Summary Scraper

parseforge/ncbi-eutils-gene-summary-scraper

Pull gene summaries from NCBI EUtils by Gene UID, returning official symbol, full name, aliases, organism, chromosome, map location, and description. Useful for annotating variant lists, building gene knowledge panels, and enriching bioinformatics dashboards with canonical NCBI metadata.

NCBI ClinVar Variant Scraper

parseforge/clinvar-esummary-scraper

Query NCBI ClinVar for human genetic variants tied to disease. Search by gene symbol, variant ID, or clinical significance and pull variation IDs, gene info, molecular consequence, clinical assertions, and review status. Useful for clinical genomics, variant curation, and research.

NCBI dbSNP Variant Scraper

parseforge/dbsnp-esummary-scraper

Search NCBI dbSNP for short genetic variants by gene symbol or rs ID. Returns rs accession, chromosome position, allele info, gene context, and global minor allele frequencies. Useful for GWAS pipelines, variant annotation, population genetics, and pharmacogenomics work.

UniProt Protein Scraper

parseforge/uniprot-protein-scraper

Query the UniProt knowledgebase with any free text search to retrieve protein entries with accession identifiers, names, gene symbols, organism, sequence length, and functional annotations. Useful for proteomics research, bioinformatics pipelines, and structural biology cross referencing.

HGNC Gene Symbols Scraper

parseforge/hgnc-gene-symbols-scraper

Query the HUGO Gene Nomenclature Committee database for approved human gene symbols, names, aliases, chromosomal location, gene family, RefSeq, Ensembl, OMIM, UniProt, and external links. Export to JSON, CSV, or Excel for bioinformatics, genomics research, and pharmaceutical pipelines.

ChEMBL Targets Scraper

parseforge/chembl-targets-scraper

Query the ChEMBL target catalog by ID, keyword, organism, or target type. Records include target ChEMBL ID, preferred name, organism, target type, gene symbol, tax ID, components with accession and description, and cross references. Useful for drug discovery research and target review.

PubMed Biomedical Paper Scraper

brilliant_gum/pubmed-scraper

Scrapes PubMed biomedical papers using the official NCBI Entrez API. Extracts full metadata including abstracts, MeSH terms, authors with affiliations, citations, grants, and more. Includes smart analytics for author networks, topic trends, and geographic distribution.

Academic Paper Scraper

constant_quadruped/academic-paper-scraper

Search arXiv and PubMed in one request. Returns unified paper data: titles, authors, abstracts, DOIs, and PDF links. Filter by keywords, authors, categories, and date range. Built-in rate limiting and cross-source deduplication. Export to JSON, CSV, or Excel.

NCBI dbSNP Variants Scraper

parseforge/ncbi-dbsnp-variants-scraper

Discover medical and biomedical records from Ncbi Dbsnp Variants with names, identifiers, classifications, descriptions, status and source links. Ideal for healthcare research, pharma teams and clinical analytics. Run on demand or on a recurring schedule and feed every row into your favourite ana.